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11 protocols using multiplexing laser bead technology

1

Tissue Homogenization and Protein Analysis

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Tissue samples (400mg) were homogenized in Tris buffer solution (Tris base 7.6pH (50mM), NaCl 150mM, EDTA 5Mm and protease inhibitor cocktail (1:100) (Sigma-Aldrich, Israel), with a Tissue homogenizer and centrifuged at 14,000 rpm (4°C, 10min) and stored in -80°C. Protein concentration was measured by bicinchoninic acid (BCA) assay (Pierce, USA). Lysate samples were evaluated by Multiplexing LASER Bead Technology (Eve Technologies, Calgary, Canada).
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2

Analyzing PEDF in Retinal Cell CM

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Conditioned media (CM) was collected during the regular media change (every 48 h) for both ARPE-19 and E-RPE cells. The conditioned media was stored at −80 °C before being assayed. Multiplexing Laser Bead Technology (Eve Technologies, Calgary, AB, Canada) was performed on CM to estimate the concentration of proteins of interest. PEDF ELISA (Abcam, Cambridge, MA, USA. cat # ab213815) was utilized to measure the amount of PEDF in conditioned media from E-RPE as the original PEDF multiplex assay had been discontinued.
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3

Multiplexed Cytokine and Chemokine Assay

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The content of cytokines and chemokines in BAL fluids were measured by Multiplexing LASER Bead Technology (Eve Technologies, Calgary, Canada) using a 31-Plex-mouse cytokine/chemokine array (Cat #: MD31) and expressed as pg/ml.
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4

Multiplexed Cytokine Profiling of Conditioned Medium

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MEF conditioned medium was assayed by Eve Technologies (Calgary, Alberta, Canada) using Multiplexing LASER bead technology. Briefly the method entails the addition of different coloured fluorescent beads coupled with specific cytokine-specific antibodies to the medium, which can be discriminated via a bead analyzer. A biotinylated antibody is used to detect the cytokine, which is then quantified using a fluorescent streptavidin-phycoerythrin conjugate. The target analyte is directly proportional to the amount of conjugate detected by the bead analyzer. For a full list of cytokines analyzed see the Supporting Information.
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5

Cytokine Analysis in Colon Tissue

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Tumors or adjacent tumor-free colonic tissue were suspended in RIPA buffer (Sigma-Aldrich, St. Louis, MO) and homogenized using a TissueLyzer II (Qiagen, Venlo, Netherlands). Samples were then centrifuged and the protein concentration in the supernatant was measured with a Bradford Protein Assay (Bio-Rad, Hercules, CA). Protein concentrations were adjusted to 1500 µg/ml for each sample. Cytokines were analyzed by Multiplexing LASER Bead Technology (Eve Technologies, Calgary, Canada).
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6

Ebola Virus Immune Response

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SupT1 cells were cultured at 1x106 cell/ml in 24-well plates in medium with or without CLI-095 at 1 μg/ml or anti-TLR4 antibodies at 50 μg/ml for 1 h. Thereafter, cells were mock-treated or treated with TPA (Sigma-Aldrich) (25 ng/ml) / ionomycin (Sigma-Aldrich) (0.5 μM) or EBOV (MOI 3 PFU/cell). Then, cells were treated with Brefeldin-A (Sigma-Aldrich) (10 μg/ml) 1 h post treatment for 24 h. Cells were harvested, stained for intracellular TNFα or IFNγ using anti-TNFα-Pacific Blue (Biolegend #502920) and anti-IFNγ-PE (eBiosciences #12-7319-42) and analyzed by flow cytometry. Supernatants were analyzed for TNFα by Multiplexing LASER Bead Technology by Eve Technologies (Calgary, Canada).
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7

Plasma Hormones and Cytokine Profiling

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Plasma adipokines, cytokines, and chemokines were evaluated using Multiplexing LASER Bead Technology (Eve Technologies, Calgary, AB). Plasma testosterone, 17β-E2, and 17α-E2 were evaluated by LC/MS/MS (29 (link)).
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8

Adipocyte-derived Product Quantification

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Concentrations of adipocyte-derived products in ATCM were analyzed by a commercial laboratory (Eve Technologies, Calgary, Alberta, Canada) using Multiplexing Laser Bead Technology as described in detail on the Company’s web site (https://www.evetechnologies.com/technology.php).
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9

Cytokine Measurement in Serum

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Serum TNF‐α and IL‐10 levels were measured by Eve Technologies using Multiplexing LASER Bead Technology.3, 4 Concentrations were determined from standard curves. Assays were linear between 30 and 1000 pg/ml of cytokine.
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10

Generation of Human Monocyte-Derived Macrophages

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THP-1 human acute monocytic leukemia cells (American Type Culture Collection) were cultured in RPMI 1640 medium (Corning) with 10% FBS and differentiated into HMDMs using phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich), as described previously (32 (link), 109 (link)). For activation of TLR4, HMDMs were cultured with a medium containing 100 ng/mL of LPS from E. coli O111:B4 (Sigma-Aldrich) for 12 h as described previously (32 (link)). TLR7 KO THP-1 cell lines, whose TLR7 expression is completely depleted, were previously generated using a CRISPR/Cas9 approach (32 (link)). Before transfection, the cells were primed with 100 units/mL of interferon γ (Thermo Fisher Scientific) for 18 to 24 h (42 (link)). To deliver RNAs to endosomes, we used the cationic liposome DOTAP (Sigma-Aldrich) as previously described (32 (link), 110 (link), 111 (link)). In brief, 230 pmol of synthetic RNAs or Resiquimod (R848, InvivoGen) were mixed with 60 µL of HBS buffer and 15 µL of DOTAP reagent and incubated for 15 min. The RNA-DOTAP solution was then added to 1 mL RPMI 1640 medium with 2% FBS, followed by incubation of the cells for 16 h. Cytokine concentrations of the cultured medium of HMDMs were measured by Multiplexing LASER Bead Technology (Eve Technologies) or ELISA kit (R&D Systems), as previously described (32 (link)).
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