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5 protocols using rabbit anti six1

1

Immunohistochemical Analysis of Embryonic and Postnatal Mouse Tissue

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E9.5 and E10.5 embryos were immersion fixed and prepared for cryosectioning and antibody labeling as described previously (Karpinski et al., 2016 (link)). At P8, each CNgV was dissected after aldehyde perfusion fixation, and then prepared and embedded whole for cryosectioning. The primary antibodies used were mouse anti-βIII tubulin (BioLegend, 801201, 1:1000), rabbit anti-Six1 (Proteintech, 10709, 1:1500), rabbit anti-fibronectin (Millipore, AB2033, 1:1000), anti-cleaved caspase 3 (Cell Signaling Technology, 9661, 1:200), chicken anti-GFP (Abcam, ab13970, 1:1000), mouse anti-NeuN (Merck Millipore, MAB377, 1:1000), rabbit anti-NeuN (Cell Signaling Technology, 24307, 1:400), mouse anti-BrdU (BD Biosciences, 555627, 1:100), rat anti-BrdU (Novus, NB500-169, 1:100), rabbit anti-Sox2 (Stemgent, 09-0024, 1:100), goat anti-TrkB (R&D Systems, AF1494, 1:100), anti-TrkA (Alomone Labs, ANT-018, 1:100), goat anti-Ret (Neuromics, GT15002, 1:50) and rabbit anti-TrpV1 (Alomone Labs, ACC-030, 1:100). Primary antibody labeling was visualized using Alexa Fluor 488-, 54- or 647-conjugated secondary antibodies (Molecular Probes, 1:4000, 488; 1:2000, 546 and 1:1000, 647). Standard BrdU immunolabeling techniques were used after acid treatment for antigen retrieval. Images were collected on a Leica Tiling or a Zeiss 710 confocal microscope.
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2

Whole Cell Protein Extraction and Western Blot Analysis

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The whole cell protein was extracted using RIPA buffer combined with protease inhibitor (Merck Millipore). The protein concentration was determined by the Bradford method (Beyotime, Shanghai, China), and 20 μg of protein was separated by 10% SDS/PAGE (Beyotime) and transferred to polyvinylidene fluoride membrane (Merck Millipore). Then, the primary antibodies were incubated at 4 °C overnight and secondary antibodies for 1 h at room temperature. The primary antibodies used were mouse anti‐β‐actin (Sigma, USA), rabbit anti‐SIX1 (Proteintech, Rosemont, IL, USA), PCNA, c‐myc, cyclin‐D1 and cyclin‐A1 (Cell Signaling Technology, USA).
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3

Embryonic Tissue Immunolabeling Protocol

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E10.5 embryos were prepared for cryomicrotmy and antibody labeling as described previously (30 (link)). Primary antibodies include mouse anti-βIII Tubulin (TuJ1; Covance, 1:1000), rabbit anti-Six1 (Proteintech, 1:1500), chicken anti-GFP (Abcam1:1000), mouse anti-NeuN (Merck Millipore, 1:1000), mouse anti-HuC/D (16A11, Life Technologies, 1:1000), Mouse anti-BrdU (BD Biosciences, 1:100),goat anti-Sox10 (Santa Cruz Biotechnology, 1:50), mouse anti-Foxd3 (Thermo Scientific, 1:400), rabbit anti-Six4 (Proteintech Group, 1:100), mouse anti-Six1 (Atlas Antibodies, 1:200), mouse anti-Brn3a (Millipore, 1:100), mouse anti-p75 (Chemicon, 1:1000), rabbit anti-TrkA (Santa Cruz Biotechnology, 1:100), rabbit anti-TrkB (Santa Cruz Biotechnology, 1:100) and rabbit anti-cleaved Caspase 3 (Cell Signalling, 1:200). Primary antibody labeling was visualized with Alexafluor 488-, 546-, or 647- conjugated secondary antibodies (Molecular Probes, 1:2000 for 546 and 647, and 1:4000 for 488). Images were collected using a Leica Tiling microscope, or a Zeiss 710 confocal microscope.
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Quantitative Western Blot Analysis

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Total protein was extracted using RIPA buffer supplemented with protease inhibitor (cat# 539134, Merck Millipore, Germany). Equivalent amounts of protein samples (30 μg) were separated by 10% SDS-PAGE gels and transferred to polyvinylidene fluoride membranes. Then, the primary antibodies were incubated at 4 °C overnight, and the secondary antibodies were incubated for 1 h at room temperature. The primary antibodies used were mouse anti-β-actin (Sigma, USA, cat#A2228), anti-O-GlcNAcylation, anti-CDH1 (Abcam, USA, cat#ab2739, cat#ab217038), rabbit anti-SIX1 (Proteintech, USA, cat#10709-1-AP), anti-GLUT1, anti-HK2, anti-GFAT1, anti-c-myc, anti-cyclin-D1 (Cell Signaling Technology, USA, cat#12939S, cat#2867T, cat#5322S, cat#13987 and cat#2978, respectively). The secondary antibodies used were purchased from Cell Signaling Technology and UltraSignal ECL reagent was purchased from 4A Biotech Co. Ltd. Bands were acquired by BioRad ChemiDoc XRS+ Imaging System and quantified with Image Lab (Bio Rad).
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5

Immunohistochemical Analysis of Hepatocellular Carcinoma

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Hepatocellular carcinoma TMAs (Outdo Biotech, Shanghai, China) were deparaffinized with dimethylbenzene and alcohol of different concentrations (100%, 95%, 85%, 75%) in sequence. Then, the TMA was boiled in a high‐pressure kettle with citrate buffer for antigen retrieval. Endogenous peroxidize was blocked using 0.5% H2O2 for 20 min, and nonspecific binding was inhibited by 10% goat serum for 30 min at room temperature. After removing the goat serum, the TMA was incubated with primary antibody (1 : 250; Proteintech) at 4 °C overnight. Then, the biotinylated anti‐mouse secondary antibody was added for 1 h and streptavidin–HRP for 30 min. Next, the TMA was stained DAB (DAB chromogen/DAB substrate = 1 : 20) and counterstained with haematoxylin and eosin (H&E). Finally, the TMA was washed and dehydrated using the reverse order of the gradient alcohol and dimethylbenzene, which were used in the dewaxed protocol. The primary antibodies used were mouse anti‐β‐actin (Sigma), rabbit anti‐SIX1 (Proteintech), PCNA, c‐myc, cyclin‐D1 and cyclin‐A1 (Cell Signaling Technology).
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