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4 protocols using ap14272b

1

Comprehensive Necroptosis Protein Analysis

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Frozen liver tissues or cells were treated with protein extraction reagent supplemented with protease inhibitor cocktail (Bimake, B14002). Extracted protein samples were used for electrophoresis and then transferred onto polyvinylidene difluoride (PVDF) membrane. The membranes were blocked with 5%(w/v) skim milk (BD Bioscience, USA) for 1 h at room temperature, and then incubated with the following primary antibodies overnight at 4 °C: TWEAK (Abcam, ab37170, 1:1000), Tnfrsf12a(Abcam, ab109365, 1:1000), Phospho-RIPK1 (Cell Signaling Technology, 31122S, 1:1000), cleaved caspase-8 (Cell Signaling Technology, 8592T, 1:1000), cleaved caspase-3 (Cell Signaling Technology, 9664S, 1:1000), cleaved PARP (Cell Signaling Technology, 94885S,1:1000), RIPK3 (Cell Signaling Technology, 15828, 1:1000), MLKL (Abgent, AP14272B, 1:1000), GSDMD (Abcam, ab219800, 1:1000), GSDME (Abcam, ab215191, 1:1000), Tubulin (Sigma, T6199, 1:1000), GAPDH (Proteintech, 10494-1-AP, 1:5000). Original western blots are presented in Supplementary file.
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2

Western Blot Analysis of Protein Signaling

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Liver tissues or cells were lysed and homogenized in RIPA buffer supplemented with a protease inhibitor cocktail (Roche). Total protein was quantified using the BCA Protein Assay Kit (Thermo Fisher). Then protein extracts were boiled at 100 °C for 10 min in sample buffer (50 mM Tris-HCl, 2% w/v SDS, 10% glycerol, 1% β-mercaptoethanol, 0.01% bromophenyl blue (pH 6.8)). Cell lysates were separated on SDS-PAGE and transferred to polyvinylidene difluoride membranes. The membranes were first incubated with blocking buffer (TBS with 0.05% Tween 20, 10% nonfat milk) for 1 h at room temperature and then incubated overnight at 4 °C in buffer containing primary antibody. After a thorough wash, cells were incubated with the appropriate HRP-conjugated secondary antibodies (1:10,000) for 1 h. Immunostaining was visualized using Amersham ECL Plus Western Blotting detection reagents (GE Healthcare) and ChemiDoc imaging system (Bio-Rad).
Antibodies used include human MLKL (1:1000; Abcam ab194699), human p-MLKL (1:1000; CST 91689S), mouse MLKL (1:1000; Abgent AP14272B), mouse p-MLKL (1:1000; Abcam ab196436), RIP1 (1:1000; CST 3493), p-RIP1 (1:1000; CST 31122), RIP3 (1:1000; Abcam ab152130), p-RIP3 (1:1000; CST 91702), α-SMA (1:1000; Invitrogen MA1-06110), Vimentin (1:1000; Abcam ab8978), Smad2/3 (1:1000; CST 8685), p-Smad2/3 (1:1000; CST 8828), Gapdh (1:10,000; CST 8884).
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3

Immunoblotting Analysis of Inflammatory Markers

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Immunoblotting was performed as previously described (24 (link), 25 ). For immunoblotting of in vivo samples, day 3 post-infection lung tissue was used. The antibodies used were: anti–caspase-1 (AdipoGen, AG-20B-0042, 1:2000), anti–caspase-3 (CST, #9662, 1:1000), anti-cleaved caspase-3 (CST, #9661, 1:1000), anti–caspase-7 (CST, #9492, 1:1000), anti-cleaved caspase-7 (CST, #9491, 1:1000), anti–caspase-8 (CST, #4927, 1:1000), anti-cleaved caspase-8 (CST, #8592, 1:1000), anti-pMLKL (CST, #37333, 1:1000), anti-MLKL (Abgent, AP14272b, 1:1000), anti-GSDMD (Abcam, ab209845, 1:1000), anti-GSDME (Abcam, ab215191, 1:1000), anti–β-actin (Proteintech, 66009–1-IG, 1:5000), and HRP-conjugated secondary antibodies (Jackson ImmunoResearch Laboratories, anti-rabbit [111–035-047], 1:5000; anti-mouse [315–035-047], 1:5000). Densitometry of the bands was quantified in ImageJ and normalized to the band density of β-actin. IL-18 release was measured using ELISA kits (Invitrogen, BMS618–3). IL-1β and TNF release were measured by multiplex ELISAs (Millipore MCYTOMAG-70K). Cytokines from BALF were measured as previously described (26 ).
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4

Immunofluorescence Staining of Tissue Sections

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Tissue slides were incubated in PBS containing 0.3% Triton X-100 and 5% BSA for 1 h. The slides were incubated with primary antibodies at 4 °C overnight. After a thorough wash, cells were incubated with the appropriate fluorescence-conjugated secondary antibodies (1:500) for 1 h at room temperature. Finally, the cell nuclei were stained with Hoechst 33342 solution for 30 min. Cells were fixed in 4% PFA at room temperature for 30 min, then follow the same staining protocol as tissue slides. Images were captured with an Olympus IX71 inverted fluorescent microscope and analyzed by professional image analysis software (Image J).
Antibodies used include α-SMA (1:200; Invitrogen MAI-06110), collagen1a1 (1:200; Arigo arg21965), Vimentin (1:200; Abcam ab8978), HNF4α (1:200; Abcam ab201460), CK19 (1:200; Abcam ab52625), F4/80 (1:200; Abcam ab6640), MLKL (1:200; Abgent AP14272B), p-MLKL (1:200; Abcam ab196436), iNOS (1:200; Abcam ab178945) and Cd206 (1:200; Abcam ab64693).
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