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10 protocols using bradford kit

1

Quantification and Visualization of OMVs

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The total protein concentration of OMV preparations was determined with a Bradford kit (Sangon Biotech), and the result was defined as the OMV concentration. For SDS‒PAGE, samples were prepared in loading buffer containing β-mercaptoethanol and heated at 100°C for 5 min before electrophoresis on a 12% polyacrylamide gel. Finally the samples were stained with a Fast Silver Stain Kit (Beyotime).
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2

Western Blot Protein Expression Analysis

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Western blot was performed as previously described [16 (link)]. Briefly, cells were lysed on ice for 30 mins using cell lysis buffer (50 mM Tris HCl, pH 7.4, with 250 mM NaCl, 1 mM EDTA, 50 mM NaF, and 0.5% Triton X-100, together with protease inhibitors). Then the lysis was centrifugation at 12000 rpm for 15 mins at 4 °C. The protein concentration of each sample was determined using Bradford Kit (Sangon Biotech. Shanghai, China). For immunoblotting, proteins were resolved by SDS-PAGE and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore). Immunoblots were developed in Western Lightning Chemiluminescence Reagent Plus (Advansta, Menlo Park, CA, USA).
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3

Differential Proteome Analysis of BmN Cells

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2-DE was used to analyse the differential expression of BmN cells in both the transfected BmNPV-miR-415 group and in the control group (no miR-415 treatment). The proteins were extracted from BmN cells at 48 h post-transfection. The protein concentration was quantified using a Bradford kit (Sangon). 2-DE was performed according to the manufacturer’s recommendations (GE Healthcare). The 2-DE gels were visualised by silver staining. The obtained images were then scanned with an HP Scanjet G2410 scanner (Hewlett Packard) and analysed through the ImageMaster™ 2D Platinum 6.0 software (GE Healthcare).
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4

β-glucosidase Activity Assay

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β-glucosidase activity was measured using 5 mM p-nitrophenyl-β- D-glucopyranoside (pNPG) (Sigma-Aldrich, St. Louis, MO, USA) in 5 mM sodium citrate buffer, pH 4.8 as substrate. Fifty microliter substrate and 100 μl sample were incubated at 50°C for 30 min, 150 μl of 10% (wt/vol) Na2CO3 was added to terminate the reaction. Absorbance was read at 420 nm in a microplate using a plate reader (Infinite 200 NanoQuant, Tecan, Zurich, Switzerland).p-nitrophenol was used to prepare a standard curve. One unit (IU) of enzyme activity was defined as the amount of enzyme needed to hydrolyze 1 μmol pNPG in 1 min.
Protein quantification was measured using Bradford with bovine serum albumin (BSA) as standard (Bradford kit, Sangon Biotech, Shanghai, China).
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5

Quantifying Bacterial Chemoreceptor Expression

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Western blot analysis was performed to verify the expression level of methyl-accepting chemotaxis protein (McpC), a chemoreceptor in chemotaxis, of P. larvae after the treatment with N-MRJP2. The total amount of protein was extracted from cells, and the concentration was determined by Bradford Kit (Sangon Biotech, Shanghai, China). Equal amounts of proteins were then separated by stacking (4%) and separating (12%) SDS-PAGE, followed by transfer to polyvinylidene difluoride (PVDF) membranes (Invitrogen). After being blocked with 5% skimmed milk in Tris-buffered saline with Tween (TBST) 20 for 1 h, the membrane was washed and incubated with a primary antibody of McpC (Signalway antibody, ShenYang, China) at a dilution of 1:2000, then washed with TBST three times and incubated with secondary antibodies (goat anti-mouse, Invitrogen) at room temperature for 1 h. The blots were visualized using the Chemic Doc XRS imaging system (Bio-Rad) in the presence of enhanced chemiluminescence (Pierce, Thermo Fisher). The targeted protein band was quantified by NIH Image J software and normalized by Sodium Potassium ATPase, which was used as a loading control and its antibody was purchased from Abcam (Cambridge, MA, USA).
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6

Protein Extraction and Quantification Protocol

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For protein extraction, SEs were transferred to lysis buffer [8m Urea, 2 mm EDTA, 10 mm DTT, 0.5% NP40, 1% Cocktail β] on ice for 30 min. Samples were sonicated for 3 min, and centrifuged at 13,000 g at 4 °C for 10 min to remove debris. Proteins were precipitated with cold 15% trichloroacetic acid for 2 h at −20 °C. After centrifugation at 4 °C at 16,000 g for 5 min, the supernatant was discarded, and the remaining precipitate was washed with cold acetone three times. The protein was re‐suspended in buffer [8m Urea, 100 mm TEAB, 0.5% NP40, PH8.0], and protein concentration was determined using the Bradford kit (C503041, Sangon Biotec, Shanghai, China).
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7

Western Blot Analysis of α-SMA

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To investigate the expression level of α-SMA, a VSMC-specific marker, after being treated with MRJP1, Western blot analysis was also performed following the standard procedure. The total amount of protein was extracted from cells, and the concentration was determined by Bradford Kit (Sangon Biotech, Shanghai, China). Then equal amounts of proteins were separated by stacking (4%) and separating (12%) SDS-PAGE, followed by transfer to polyvinylidene difluoride (PVDF) membranes (Invitrogen). After being blocked with 5% nonfat milk in Tris buffered saline with Tween 20 (TBST) at 37 °C for 1 h, the membrane was washed and incubated with primary mice antibodies for α-SMA at a dilution of 1:500. Then the membrane was washed with TBST three times and incubated with secondary antibodies (goat antimouse, Invitrogen) at room temperature for 1 h. The blots were visualized using the Chemic Doc XRS imaging system (Bio-Rad) under the presence of ECL Western blotting substrate (Pierce). The bands were quantified using Quantity One software (v4.6.2, Bio-Rad) and normalized by glyceraldehyde 3-phosphate dehydrogenase (GAPDH), which was used as a loading control.
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8

Enzyme Activity Quantification in Fermentation Broth

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The fermentation broth was collected via centrifugation, and the aliquots of the supernatant were diluted to measure enzyme activity. To examine β-glucosidase activity, pNPG and cellobiose (Sigma, USA) were used as substrates. We conducted the enzyme reaction in acetate buffer (pH 4.8) at 50 °C for a total of 30 min, after which we added 10 % Na2CO3 to stop the reaction. pNP release was measured and the absorbance was read at 405 nm. The glucose level was measured with the Biosensor. One enzyme activity unit represents the amount of enzyme required to either produce one µmol glucose, or pNP per minute under the above condition. To measure the FPase activity, the enzyme reaction was conducted in 0.2 mol/L acetate buffer (pH 4.8) at 50 °C for a total of 60 min with 0.05 g Whatman No. 1 paper as the substrate. DNS method was used to quantify the released reducing sugars. A protein concentration assay was performed using a Bradford kit (Sangon Biotech, Shanghai, China). Three biological triplicates were performed throughout all described experiments. Both equal quality and volume of culture supernatants were performed for SDS-PAGE analysis, and the predicted β-glucosidase bands were excised for MALDI-TOF–MS identification. We measured the released sugars within the broth supernatants via LC-10 AD HPLC (Shimadzu, Japan) by a BioRad Aminex HPX-42A carbohydrate column (Bio-Rad, USA).
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9

Protein Profiling of Liver Injury

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Aspartate aminotransferase (AST) and alanine aminotransferase (ALT) were purchased from Nanjing Jiancheng Institute of Biotechnology (Nanjing, China). Hyaluronic acid (HA), laminin (LN), collagen III (Col III) and collagen IV (Col IV) ELISA kits were obtained from Abbott Laboratories, USA. A Bradford kit was bought from Sangon Biotech, Shanghai, China. Sirius red and hematoxylin-eosin (HE), protease inhibitor cocktail, 3-[(3-Cholamidopropyl) dimethylammonio]-propanesulfonate (CHAPS), glycine, ammonium persulfate (APS), TEMED, and protease inhibitor cocktail were obtained from Sigma Chemical (St. Louis, MO, USA) Dithiothreitol (DTT), glycine, Immobilized pH gradient (IPG) strips, IPG buffer, dry strip cover fluid and other reagents that were used in two-dimensional gel electrophoresis were acquired from Bio-Rad (Hercules, CA, USA).
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10

Extracellular enzyme activities assay

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Supernatants were collected by centrifugation for removing mycelia and residual medium. The concentration of total extracellular protein was measured by a Bradford Kit (Sangon, Shang Hai, China), according to the manufacturer’s instructions. FPA and CMCase activities were assayed with filter paper Whatman No. 1 (Shanghai, China) and CMC-NA (Sigma, USA) as the substrates, respectively. The enzyme reactions were performed in 0.2 M acetate buffer (pH 4.8) at 50°C for 60 and 30 min, respectively, using DNS method to quantify the released reducing sugar. Xylanase activity were assayed according to the method described by Sun et al. [56 (link)]. The pNPCase and pNPGase activities were measured in the above-used acetate buffer at 30°C for 30 min with pNPC and pNPG (Sigma, USA) as substrates. One enzyme activity unit was defined as the amount of enzyme required for producing 1 μmol glucose or pNP per minute under the assayed conditions. Three biological triplicates were performed in all analyses.
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