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Ir053

Manufactured by Agilent Technologies
Sourced in Denmark, United States

The IR053 is a high-performance Fourier Transform Infrared (FTIR) spectrometer designed for advanced analytical applications. It offers a wide spectral range, high resolution, and exceptional signal-to-noise ratio, making it suitable for a variety of research and industrial uses.

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5 protocols using ir053

1

Immunohistochemical Profiling of Tumor Tissues

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Tissue slices were stained with hematoxilyn and eosin (HE) and tumor tissue vitality was confirmed. Slices with necrosis >50% were excluded from further immunohistochemical stainings. Slices were stained with antibodies against Ki67 (MIB-1, Dako, Glostrup, Denmark), PD-L1 (ab213524, Abcam, Cambridge, UK) or double stained using the Envision G/2 Doublestain System or Envision Flex Doublestain System (Dako). The antibody combinations were CD3 (IR503, Dako) + Ki67 (MIB-1, Dako), CD3 (IR503, Dako) + CK AE1/3 (IR053, Dako), CD8 (IR623, Dako) + Ki67 (MIB-1, Dako), PD1 (ab52587, Abcam) + Ki67 (MIB-1, Dako), and PD1 (ab52587, Abcam) + CK AE1/3 (IR053, Dako). All slides were stained with automatized immunostainers (Autostainer Plus, Dako).
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2

Confirming Bone Metastasis Absence

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The absence of bone metastasis was confirmed by X-ray and bone scintigraphy. Neoplastic cells infiltration in BM aspirates was ruled out by immunocytochemistry staining (Universal LSAB System, K0673, Dako) using monoclonal antibodies (Abs) against epithelial membrane antigen (IS629, Dako) and cytokeratin AE1–AE3 (IR053, Dako). Cell morphology analysis was performed by the Pappenheim technique. Patient´s BM were considered positive for metastasis if cells expressed epithelial membrane antigen and cytokeratins AE1–AE3 and were morphologically malignant.
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3

Immunohistochemical Characterization of Primary Endometrial Cells

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Primary endometrial epithelial cells and stromal cells were seeded onto 48-well plates and grown until 90% confluency. The cells were washed with 1X PBS before being fixed with 10% neutral formalin for 20 min at room temperature. Cells were permeated with 0.1% Triton for 15 min and non-specific binding sites were blocked with 10% normal goat serum for 1 h. After washing twice with PBST, cells were incubated with primary antibodies against cytokeratin (AE1/AE3, 1:100, IR053, DAKO, Glostrup, Denmark) and vimentin (1:100, M0725, DAKO, Glostrup, Denmark) in the blocking medium at 4 °C overnight. The cells were washed with PBST four times before incubating with a secondary goat anti-mouse antibody with Alexa Fluor 488 (1:500, Abcam, MA, USA) in a blocking solution at room temperature for 1 h. After washing, the nuclei were stained with DAPI (20 µg/mL, Invitrogen, Carlsbad, CA, USA) in PBST for 3 min. Fluorescence images were captured under a fluorescence microscope (Nikon, Tokyo, Japan).
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4

Frozen Lymph Node Sectioning and IHC

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The same frozen sections of lymph node were used for both HE staining and IHC intraoperatively. Resected lymph nodes were cut at 2 mm intervals, then immediately embedded in optimum cutting temperature compound, frozen for 30 seconds in liquid acetone at −80°C using a frozen specimen block preparation system, and transferred to a cryostat for sectioning. Anti‐pancytokeratin (CK) antibody cocktail (AE1/AE3 approved as in vitro Diagnostics; IR053, Dako) in a 150 μL volume was applied to the sections under a high‐voltage (4.0 kVp‐p, offset 2.25 kV), low‐frequency (5 Hz) AC electric field. Procedures and times for IHC are summarized in Table S1.
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5

Detecting Metastasis in Bone Marrow

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The absence of BM infiltration with neoplastic cells was confirmed by an immunocytochemistry system (cat. K0673, Dako, Carpinteria, CA, USA) and cell morphology analysis was performed by the Pappenheim technique. Aspirates from BM were stained with antibodies (Abs) against epithelial membrane antigen (cat. M0613, Dako, Carpinteria, CA, USA) and cytokeratins AE1–AE3 (cat. IR053, Dako, Carpinteria, CA, USA). Samples were considered positive for metastasis only if cells expressed EMA and cytokeratins AE1–AE3 and if cells were morphologically malignant. Isotype controls (cat. X0943, Dako, Carpinteria, CA, USA, and cat. 08-6599, ZYMED Laboratories, South San Francisco, CA, USA) were run in parallel using the same concentration of each Ab tested [37 (link)]. Experiments were repeated two times for each sample.
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