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1 1 dioctadecyl 3 3 3 3 tetramethylindo carbocyanine iodide dir

Manufactured by Thermo Fisher Scientific
Sourced in United States

1,1'-dioctadecyl-3,3,3',3'-tetramethylindo-carbocyanine iodide (DIR) is a fluorescent dye commonly used as a lipophilic tracer in biological research. It is a crystalline solid that exhibits red fluorescence when excited with appropriate wavelengths of light.

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3 protocols using 1 1 dioctadecyl 3 3 3 3 tetramethylindo carbocyanine iodide dir

1

Lipophilic Dye Labeling for Macrophage Analysis

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Lipophilic fluorescent dyes, 1,1’-dioctadecyl-3,3,3’,3’-tetramethylindo-carbocyanine iodide (DIR) and 1,1’-dioctadecyl-3,3,3’,3’-tetramethylindocarbocyanine (DIL), were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Murine macrophage colony-stimulating factor (MCSF) was purchased from Peprotech Inc. (Rocky Hill, NJ, USA). A human liver microsome (HLM) quality control (QC) (Gentest mixed gender pool of 50) was purchased from Corning (Corning, NY, USA). Ultrapure water was obtained from a Picopure® 2 system (Hydro Service and Supplies, Inc. Durham, NC, USA). Trypsin Gold mass spectrometry grade (100 μg; item # V5280) was purchased from Promega (Madison, WI, USA). Cell culture medium and fetal bovine serum (FBS) were purchased from Gibco Life Technologies, (Grand Island, NY, USA). The solid phase extraction (SPE) cartridges for sample clean up were Strata-X 33u Polymeric Reversed Phase (10 mg/mL) (part no. 8BS100AAK) purchased from Phenomenex (Torrance, CA, USA). Ammonium bicarbonate, dithiothreitol, β-casein from bovine milk, sodium deoxycholate, iodoacetamide and acetic, formic and trifluoroacetic acids were purchased from Sigma-Aldrich (St. Louis, MO, USA). Acetonitrile (HPLC grade), methanol and flat cap 0.2 mL PCR tubes (catalog # 14230227) were purchased from Fisher Scientific (Pittsburg, PA, USA). All other chemicals were reagent grade.
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2

Characterization of Recombinant Human TPP1 Protein

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Recombinant full-length Human TPP1 protein (lot #BIQE03, UniProtKB—O14773 (TPP1_HUMAN)) was a generous gift from BioMarin Pharmaceutical Inc. (Novato, CA, USA). Lipophilic fluorescent dye, 1,1′-Dioctadecyl-3,3,3′,3′-tetramethylindo-carbocyanine iodide (DIR), was purchased from Thermo Fisher Scientific (Waltham, MA, USA). A nuclear dye, 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI), was obtained from Sigma-Aldrich (St. Louis, MO, USA). Primary Anti-NeuN antibody (ab77487, neuronal marker), anti-microtubule-associated protein 2 (MAP2) (ab5392, neuronal marker), rabbit polyclonal anti-GFAP antibody (ab7260, astrocytosis marker), and anti-ATP synthase C antibody (ab181243, lysosomal storage body marker) were purchased from Abcam (Cambridge, MA, USA). Secondary antibody, goat anti-rabbit IgG H+L Alexa Flour 488 (A-11008), was purchased from Invitrogen (Carlsbad, CA, USA). Murine macrophage colony-stimulating factor (MCSF) was purchased from Peprotech Inc. (Rocky Hill, NJ, USA). Cell culture medium and fetal bovine serum (FBS) were purchased from Gibco Life Technologies (Grand Island, NY, USA). All other chemicals were reagent grade.
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3

Plasmid encoding luciferase reporter and GDNF

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The plasmid encoding the reporter gene luciferase (Luc) (gWILuc) and Human GDNF cDNA (NM_199234) were purchased from Gene Therapy Systems, (San Diego, CA), and OriGene (Rockville, MD), respectively. The sequence and condition for plasmids expansion can be found in our earlier publication49 (link). A lipophilic fluorescent dye, 1,1′-dioctadecyl-3,3,3′,3′-tetramethylindo-carbocyanine iodide (DIR), was purchased from Thermo Fisher Scientific (Waltham, MA). Murine macrophage colony-stimulating factor (MCSF) was purchased from Peprotech Inc (Rocky Hill, NJ).
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