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Sodium dodecyl sulphate polyacrylamide gels

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Sodium dodecyl sulphate–polyacrylamide gels (SDS-PAGE) are commonly used for separating and analyzing proteins based on their molecular weight. These gels consist of a polyacrylamide matrix and the anionic detergent sodium dodecyl sulfate (SDS), which denatures and coats the proteins with a uniform negative charge. This allows the proteins to be separated solely by their molecular weight as they migrate through the gel matrix under an applied electrical field.

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4 protocols using sodium dodecyl sulphate polyacrylamide gels

1

Western Blot Analysis of Protein Expression

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Protein expression was analysed using western blotting.35 (link) Cells/sciatic nerves were lysed in radioimmunoprecipitation assay (RIPA) buffer (Thermo Fisher); sciatic nerves were sonicated into lysis buffer using a Q500 sonicator (Thermo Fisher). Lysates were run on sodium dodecyl sulphate–polyacrylamide gels (Bio-Rad), transferred onto polyvinylidene-fluoride (PVDF) membranes (Cytiva), blocked in 5% bovine serum albumin (BSA), incubated with primary antibodies in BSA overnight at 4°C and then horse radish peroxidase (HRP)-conjugated secondary antibodies in 5% BSA for 1 h at room temperature. Blots were visualized using Pierce™ enhanced chemiluminescence (ECL) (Thermo Fisher) on a PXi developer (Syngene), quantified by densitometry and normalized to glyceraldehyde-3-phosphatase dehydrogenase (GAPDH) or vinculin loading controls using ImageJ. In Figs 2, 5E and 6E, blots shown are representative of independent biological repeats; Fig. 5L shows collated blots from the same three paired biological repeats. Figure 7D shows three paired biological repeats on the same blot. Figure 8C and E show representative blots of technical repeats.
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2

Western Blot Analysis of APP in hNS1 Cells

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hNS1 cells cultivated in multiwell plates were dissociated with trypsin and centrifuged in PBS. The pellets were treated with lysis buffer (RIPA, Cell Signaling Technology, Danvers, MA, USA) to obtain cell extracts. Then, 50 μg of total proteins from cell extracts were loaded on sodium dodecyl sulphate-polyacrylamide gels (10%, BioRad, Hercules, CA, USA), electrophoresed (SDS-PAGE), and transferred to nitrocellulose membranes (GE Healthcare, Madrid, Spain). Membranes were blocked with milk (5%) and Tween20 (0.05%, Sigma) in TBS for 1 h and incubated overnight at 4 °C with mouse antibodies against APP (clone 22C11; 1:1000, Millipore, Merck, Darmstadt; Germany) and β-actin (1:1000, Sigma). Then, membranes were washed with Tween20 in TBS and incubated with HRP-conjugated antibody (horse anti-mouse peroxidase; 1:3000, Vector Laboratories, Newark, CA, USA) for 1 h. All antibodies used were diluted in milk and Tween20 in TBS. Visualization of immunoreactive bands was performed using ECL chemiluminescent system (Millipore) according to the manufacturer’s instruction. For quantification of blot images, densitometry analyses were realized using the software ImageJ v.1.54a. Band intensity was measured as a ratio of the protein of interest (APP using 22C11 antibody) to β-actin from three independent experiments.
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3

Quantitative Western Blot Analysis

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Electrophoresis was carried out in 4-20% sodium dodecyl sulphate polyacrylamide gels (Biorad) with 20 or 10 μg of cytosolic or nuclear protein, respectively. Snap i.d. system (Merck Millipore) was used for membrane blocking and antibody incubation. Anti-Nrf2 (1:1000, Millipore), anti-NFκB-p65 (1:10000, Abcam), anti-iNOS (1:1000, Abcam), anti-phospho-p38 (1:1000, Abcam) and anti-p38 (1:1000, Abcam) were used for the evaluation of protein expression and signal was normalized using anti-lamin B1 (1:2000, Abcam) and anti-β-actin (1:2000, Millipore) for nuclear and cytosolic fractions, respectively. Activation of p38 kinase was calculated as the ratio of phosphorylated and total protein levels. Protein bands were detected with Supersignal West Pico Luminiscent Substrate and Supersignal West Femto Maximum Sensitivity Substrate and Diversity GeneSnap system and software (Syngene, Cambridge, U.K.).
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4

Western Blot Analysis of Cellular Proteins

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Samples containing 20 µg of cytosolic protein or 10 µg of nuclear and membranous protein were loaded in 4-20 % sodium dodecyl sulphate polyacrylamide gels (Biorad, Hercules, CA, USA). Proteins were transferred to PVDF membranes (Merck) with a Trans-Blot® semi-dry transfer cell (Biorad). The Snap i.d. system (Merck) was used for membrane blocking and antibody incubation as previously described 19 . Anti-Nrf2 primary antibody (1:1000, Merck), anti-NFkB-p65 (1:1000, Merck), anti-iNOS antibody (1:5000, Abcam, Cambridge, UK) and anti-gp91-phox (1:1000, Merck) were used to detect their corresponding proteins. Protein band intensity was corrected using anti-lamin B1 (1:5000, Abcam), anti-sodium potassium ATPase (1:10000, Abcam), anti-β-actin (1:10000, Merck) and anti-GAPDH (1:5000, Merck) in nuclear, membranous, and cytosolic fractions, respectively. The immunoreactive bands were detected with Supersignal West Pico Luminiscent Substrate and Supersignal West Femto Maximum Sensitivity Substrate. Diversity GeneSnap system and software (Syngene, Cambridge, U.K.) were used for protein bands detection. Experiments were performed at least three independent times by duplicate.
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