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2 protocols using d5 tag 48 0

1

Lipidomic Analysis of Insect Fat Body

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Lipids were extracted from wandering 3rd instar larval fat body as previously described [60 (link)]. The lipidomic analyses were carried out on an analytical system comprising an Agilent HPLC 1260 coupled with a SCIEX 5500 QTRAP. Separation of individual classes of polar lipids by normal phase HPLC was carried out using a Phenomenex Luna 3u silica column (i.d. 150x2.0 mm). Multiple reaction monitoring (MRM) transitions were set up for quantitative analysis of various polar lipids. Individual lipid species were quantified by referencing to spiked internal standards. PC-14:0/14:0, LPC-C20, PE-14:0/14:0, PS-14:0/14:0, PA-17:0/17:0, PG-14:0/14:0 were obtained from Avanti Polar Lipids and dioctanoyl phosphatidylinositol (PI, 16:0-PI) was obtained from Echelon Biosciences, Inc. Separation of glycerol lipids (DAG and TAG) by reverse phase HPLC/ESI/MS/MS was carried out on a Phenomenex Kinetex 2.6μ-C18 column (i.d. 4.6x100mm). Using neutral loss-based MS/MS techniques, the levels of TAG were calculated as relative contents to the spiked d5-TAG 48:0 internal standard (CDN Isotopes), while DAG species were quantified using 4ME 16:0 Diether DG as an internal standard (Avanti Polar Lipids). Free cholesterols and ergosterols were analyzed using HPLC/APCI/MS/MS with the corresponding d6-Cho (CDN Isotopes) as the internal standard.
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2

Lipid Extraction from Cell Pellets

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Lipids from cell pellets were extracted using butanol:methanol (1:1) as extraction solvent. The extraction solvent included an internal standard mixture consisting of 17:0 LPC (lysophosphocholine), C14 LPE (lysophosphoethanolamine), C17 ceramide, C17 phosphocholine, C17 phosphoserine, C17:0 PG, C8-ceramide, DMPE (1,2-dimyristoyl-glycero-3-phosphoethanolamine), DMPG [1,2-dimyristoyl-glycero-3-phospho-(1′rac-glycerol)], DMPS (dimyristoyl-glycero-phosphoserine), 12:0 DG (1,2-dilauroyl-sn-glycerol), C8 GluCer (d-glucosyl-β1-1′-N-octanoyl-d-erythro-sphingosine), 24:0 SM (N-lignoceroyl-d-erythro-sphingosylphosphorylcholine), 24:1 SM (N-nervonoyl-d-erythro-sphingosylphosphorylcholine), and d5-TAG 48:0. All the standards were obtained from Avanti Polar Lipids (Alabaster, AL, USA) except for d5-TAG 48:0 that was obtained from CDN Isotopes. All standards were added to a final concentration of 100 ng/ml. One hundred microliters of the extraction solvent including the standards was added to 1 × 107 cells in a vial containing the cell pellet. The mixture was vortexed for 15 s. The samples were then sonicated in a sonicator bath for 60 min at room temperature. The mixture was then centrifuged at 14,000g for 5 min. The supernatant was transferred to new tubes and kept at −80°C until the analysis.
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