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9 protocols using pe anti human cd25

1

Comprehensive Flow Cytometry Analysis

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All samples were analyzed using a NovoCyteTM (ACEA Biosciences), LSR Fortessa, or C6 flow cytometer (BD Biosciences), and data were analyzed using FlowJo software (FlowJo, LLC, Ashland, OR, USA). The antibodies used included anti-MSLN-biotin (clone MB), Streptavidin-APC, anti-human CCR7-APC (clone 3D12), anti-human CD62L-PE (clone DREG-56), anti-human CD45RA-APC (clone HI100), anti-human CD45RO-PE (clone UCHL1), anti-human TIM3-PE (clone F38-2E2), anti-human LAG3-PerCP/Cy5.5 (clone 11C3C65), anti-human PD-1-APC (clone NAT105), anti-human CD27-PE (clone M-T271), anti-human CD28-APC (clone CD28.2), anti-human CD25-PE (clone BC96), anti-human CD69-APC (clone FN50), anti-human CD107a-APC (clone H4A3), anti-human CD3-APC (clone UCHT1), anti-human CD4-PerCP/Cy5.5 (clone OKT4), anti-human CD8-PE (clone OKT8), mouse IgG2a isotype control-APC (clone RMG2a-62), mouse IgG1kappa isotype control-PE, mouse IgG1kappa isotype control-PErCP/Cy5.5, and mouse IgG1kappa isotype control-APC (clone MOPC-21) (Biolegend, San Diego, CA, USA). All FACS-related staining procedures were performed on ice for 30 min, and cells were then washed with PBS containing 1% FBS before cytometry analysis. PB, spleen (SP), and tumor samples from mouse xenografts were treated with red blood cell lysis buffer (Biolegend), and the cells were stained with the corresponding antibodies.
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2

Multiparameter Flow Cytometry Immunophenotyping

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The flow cytometry antibodies used in this study were as follows: anti-human CD3-APC-Cy7 (BD, 557832); anti-human CD4-BV510 (BD, 562970); anti-human CD8-PE-Cy7 (BD, 557746); anti-human CD45RA-BV605 (BD, 562886); anti-human CCR7-APC-R700 (BD, 565867); anti-human-CD8-APC (BioLegend, 300912); anti-human-CD25-PE (BioLegend, 302605); anti-human CD26-PE (BioLegend, 302705); anti-human CD49f-FITC (BioLegend, 313605); and the fluorescent dye 7-AAD (BioLegend, 420404). The cells were incubated with 1% Fc receptor blocker for 10 minutes and incubated with antibodies for 30 minutes. Flow cytometry analyses were conducted using the BD FACS Canto system. The data were analyzed with FlowJo software.
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3

Multiparametric Flow Cytometry Analysis

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PBMCs were labeled with the surface markers anti-human CD14-FITC (clone: 61D3, eBioscience), anti-human HLA-DR-PE (clone: L243, eBioscience), anti-human CD11B-PE (clone: M1/70, Biolegend), anti-human CD33-APC (clone: WM53, BD Biosciences), anti-human CD15-PE-Cy5 (clone: SSEA-1, Biolegend), anti-human CD4-FITC (clone: OKT4, Biolegend), anti-human CD25-PE (clone: BC96, Biolegend), and anti-human CD127-APC (clone: A019D5, Biolegend) antibodies, according to the manufacturer's protocol. In addition, isotype antibodies were used to ensure correct compensation and confirm the specificity of the staining. After washing with PBS, cells were fixed and detected using a FACS Calibur flow cytometer (LSR II, BD Biosciences, San Jose, CA, USA). The analyses of flow cytometry data were performed using FlowJo7.6.1 (Treestar Inc., USA). The estimated absolute numbers of MDSCs were calculated as previously described [20, 25] .
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4

Isolation and Characterization of PBMCs

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Peripheral blood mononuclear cells (PBMCs) were isolated by Ficoll-Hypaque density gradient centrifugation. For surface staining, PBMCs were stained for 30 min in the dark at 4°C with the monoclonal antibodies PE-CF594 mouse anti-human CD4 (BD Biosciences, San Diego, CA, USA), PE anti-human CD25 (BioLegend, San Diego, CA, USA), FITC anti-human CD161 (BioLegend), 7AAD (BD Pharmingen, San Diego, CA, USA), and CD45RO PE-Cy7 (BD Biosciences) or with FITC Mouse IgG1 κ isotype control (BioLegend) and Mouse IgG1 κ isotype control PE (eBioscience, San Diego, CA, USA). For intracellular staining of cytokines, incubate PBMCs in RPMI 1640 medium (Gibco, Life Technologies, Shanghai, China) in 5% CO2 at 37°C, then stimulate these cells for 5 h, PBMCs were stimulated for 5 h with 50 ng/mL phorbol 12-myristate 13-acetate (PMA; Sigma-Aldrich, Steinheim, Germany) and 1 μg/mL ionomycin (BD Pharmingen) in the presence of 10 μg/mL Brefeldin-A (BFA; BioLegend) and subsequently fixed and permeabilized by Foxp3/Transcription Factor Staining Buffer Set (eBioscience). Then the cells were stained for 30 min away from the light at 4°C with anti-human IL-17A APC (eBioscience) or Mouse IgG1 κ Isotype Control APC (eBioscience).
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5

Single-Cell ATAC-Seq of Human PBMCs

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Human PBMCs were thawed after storage in liquid nitrogen and allowed to recover overnight in R10 culture medium (RPMI1640 medium supplemented with 10% fetal calf serum (FCS), 25 mM HEPES, 1* nonessential amino acids, 50 μM β-mercaptoethanol, and 1 × penicillin and streptomycin). Cell surface staining was performed with the following antibodies: DAPI, Alexa Fluor® 700 anti-human CD3 (Clone SK7, 1:100, BioLegend, Cat #344822), FITC anti-human TCR α/β (Clone IP26, 1:50, BioLegend, Cat #306706), PerCP/Cyanine5.5 anti-human CD8 (Clone SK1, 1:200, BioLegend, Cat #344710), PE/Dazzle™ 594 anti-human CD4 (Clone A161A1, 1:200, BioLegend, Cat #357411), PE anti-human CD25 (Clone BC96, 1:200, BioLegend, Cat #302606), Brilliant Violet 650™ anti-human CD127 (Clone A019D5, 1:200, BioLegend, Cat #351326), APC anti-human CD137 (4– 1BB) (Clone 4B4–1, 1:100, BioLegend, Cat #309810), Brilliant Violet 605 anti-human CD279 (PD-1) (Clone EH12.2H7, 1:100, BioLegend, Cat #329923). Single viable DAPI-CD3+TCRaß+ T cells were immediately indexed sorted into 96-well plates for Ti-ATAC-seq analysis using BD FACS Aria III.
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6

Isolation and Staining of Human and Murine Tregs

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Fresh human PBMCs were stained with monoclonal antibodies, such as PercP-Cy5.5-anti-human CD3, APC/Cy7-anti-human CD4, PE-anti-human CD25, and Brilliant Violet 510-anti-human CD127 (all purchased from BioLegend, San Diego, CA, USA), in 0.5% BSA + 2 mM EDTA in PBS. Splenocytes were obtained from the spleens of mice by mechanical disruption and through a 200-gauge steel mesh. Splenocytes were lysed with 1X red blood cells (RBCs) lysis buffer to remove RBCs. First, magnetic microbeads (Miltenyi Biotec) bead-based enrichment of CD4+T cells was performed. Then, cells were stained with monoclonal antibodies, such as PE-anti-mice CD4, APC/Cyanine7-anti-mice CD25, and Alexa-Fluor647-anti-mice CCR6 (all purchased from BioLegend), in 0.5% BSA + 2 mM EDTA in PBS. Human Treg cells and murine Treg cells were sorted using a SH800S cell sorter (SONY, Japan) and analyzed with the SH800 software (SONY, Japan). Human Treg cells were gated as CD3+CD4+CD25+CD127- within the lymphocyte gate, which excluded cell debris, doublets, and dead cells (Supplementary Figure 2). Mice Treg cells were gated as CD4+CD25+ within the lymphocyte gate which excluded cell debris, doublets, and dead cells (Supplementary Figure 2). The purity of the sorted cell population was above 95% for human and 91% for mice, which was verified using post-sorting flow cytometry.
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7

Characterization of Immune Cell Subsets

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The PBMC cryovials were removed from storage and immediately thawed in a water bath at 37 °C. For analysis of the cell surface molecules, PBMC suspensions were prepared and incubated with the following antibodies: PreCP-Cyanine 5.5-anti-human CD3 (317336, Biolegend, San Diego, CA, USA), FITC-anti-human CD4 (357406, Biolegend, San Diego, CA, USA), APC-Cyanine 7-anti-human CD8 (344714, Biolegend, San Diego, CA, USA), PE-anti-human CD25 (302606, Biolegend, San Diego, CA, USA), PE-Cyanine 7-anti-human CD45RA (304126, Biolegend, San Diego, CA, USA), APC-anti-human CD127 (351316, Biolegend, San Diego, CA, USA), BV421TM-anti-human CCR7 (353208, Biolegend, San Diego, CA, USA) and BV785-anti-human HLA-DR (307624, Biolegend, San Diego, CA, USA). Flow cytometry data were acquired using a BD LSR Fortessa X-20 cell analyzer (BD Biosciences, San Jose, CA, USA) and analyzed with FlowJo software version 10.10.0 (Tree Star, OR, USA). The cells were sorted into CCR7+CD45RA+ (Tnaïve), CCR7−CD45RA+ (Teff), CCR7+CD45RA− (TCM), CCR7−CD45RA− (TEM), and CD4+CD25+CD127− (Treg) subpopulations, as shown in the gating strategy (Figure 1B). Since it is difficult to make comparisons based on absolute counts, the analysis of subpopulations was based on the percentage of each population. Spanning Tree Progression of Density Normalized Events (SPADE) analysis [15 (link)] was implemented using the R package.
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8

Quantifying Tregs and CAFs by Flow

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For the Tregs analysis, fluorescein isothiocyanate antihuman CD4 (BioLegend, San Diego, CA), PE anti-human CD25 (BioLegend), and Alexa Fluor 647 anti-human FoxP3 (BioLegend) were used to label Tregs, and fluorescein isothiocyanate anti-human CD68 (BioLegend) was used to mark CD68 þ CAFs, which were quantified by flow cytometry on a BD FACSCalibur instrument (BD Biosciences, Franklin Lakes, NJ).
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9

Immunophenotyping of T-ALL-iPSC and T Cells

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The T-ALL-iPSC were stained with PE anti-human TRA-1-60, APC anti-human SSEA-4 (Biolegend, USA) for 20 min at 4˚C and analyzed by the ow cytometry software. T cells were stained with FITC anti-human CD3, PerCp/Cyanine5.5 anti-human CD4, APC anti-human CD8a, PE anti-human CD25, PE anti-human PD-1, and PE anti-human CD57 (Biolegend, USA) for 20 min at 4˚C and analyzed by the ow cytometry software.
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