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Proteinase k buffer

Manufactured by Merck Group
Sourced in United States

Proteinase K buffer is a solution used in molecular biology and biochemistry applications to facilitate the digestion of proteins. It contains the enzyme Proteinase K, which is a serine protease that cleaves peptide bonds on the carboxyl side of aliphatic, aromatic, or hydrophobic amino acid residues. The buffer maintains the optimal pH and ionic conditions for the enzyme's activity.

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4 protocols using proteinase k buffer

1

Apoptosis and Proliferation Analysis of Tumor Tissues

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TdT-mediated dUTP nick end labeling (TUNEL) and Ki67 staining at the end of the 16-day experimental period were used to analyze the apoptosis and proliferation of the tumor tissues. The tumor tissue was removed, fixed in 4% paraformaldehyde for 24 h, and then embedded in paraffin for preservation. Paraffin sections were dewaxed with xylene, dehydrated with gradient alcohol, subjected to antigen retrieval, blocked and then incubated with antibodies against Ki67 overnight. After the appropriate specific secondary antibody was added, the staining results were observed under a microscope after the color development of DAB.
Paraffin sections were dewaxed with xylene, dehydrated with gradient alcohol and washed with PBS. Proteinase K buffer (Sigma, USA) was added for 30 min. After washing with PBS, 50 μL TUNEL reaction mixture (5 μL TdT+45 μL fluorescein labeled dUTP solution) was added, and the slides were placed in a humidified box at 37° in the dark for 1 h. The slides were washed with PBS and incubated with DAPI for 5 min. Then, the slices were sealed and observed under a fluorescence microscope.
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2

Macrophage Depletion Verification in Adipose and Liver

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To verify macrophage depletion after the CCL treatment, we performed immunohistochemical staining of the visceral white adipose tissue and liver by using an antibody against F4/80 protein, a specific marker for macrophages. Animals were sacrificed using Isoflurane overdose and transcardially perfused with PBS followed by 4% formaldehyde. Formalin-fixed paraffin-embedded visceral adipose tissues were sectioned (5 μm thick), deparaffinized in xylene, and rehydrated prior to antigen unmasking in proteinase K buffer (Sigma-Aldrich). Sections were blocked with 3% hydrogen peroxide and 5% goat serum and then incubated with rat anti-mouse F4/80 primary antibody (1:200; AbD Serotec, Raleigh, NC) overnight. Sections were then incubated with biotinylated goat anti-rat secondary antibody (1:500; Jackson ImmunoResearch Laboratories, Inc., West Grove, PA) for 2 hours followed by incubation in Avidin-Biotin Complex and developed using 3,3’-diaminobenzidine as substrate (Vector Laboratories, Burlingame, CA). All incubations took place in a humidity chamber at room temperature. Liver sections were counterstained with cresyl violet. Sections were examined using a Leica DM 2000 LED light microscope and images were captured using a Leica ICC50 W Microscope Camera and Leica Imaging Software. F4/80 positive cells were counted on 10 high power (20x) fields per slide (n = 3/condition).
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3

Endogenous HUVEC RNA Immunoprecipitation

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Endogenous HUVECs RNA immunoprecipitation (RIP) studies were performed as previously described [24 (link)] with minor modifications. Briefly, HUVECs whole cell lysates were exposed to magnetic protein A–protein G beads coupled either with 5 μg of normal rabbit IgG (Millipore) or AUF1 rabbit polyclonal IgG antibody (Millipore 07–260) and incubated at 4 °C overnight in a rotating platform. Proteinase K buffer (Millipore) was used for the release of the precipitated RNA which was recovered. Monitoring the proper binding efficiency of the antibody, AUF1 protein presence was quantified in both the input and in the immunoprecipitant. In order to compare the input fraction with the AUF1-RIP immunoprecipitates, input fraction was processed in parallel under the exact conditions as the beads.
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4

RNA Immunoprecipitation Assay with m6A

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RNA immunoprecipitation was assayed with EZ‐Magna RIP kit (Millipore). Cells were resuspended with 200 μL RIP lysis reagent, and magnetic bead was coated with antibodies (Ab‐Flag or Ab‐m6A; Abcam) for immunoprecipitation. IgG served as control. Following centrifugation, 100 μL supernatants were discarded. Bead‐antibody complexes within RIP immunoprecipitation reagent were incubated with each tube at 4°C overnight. Immunoprecipitation was resuspended with 150 μL proteinase K buffer (Millipore), followed by incubation at 55°C lasting 30 min. Following centrifugation, the tube was added onto magnetic separator for collecting the supernatants, followed by RNA extraction and precipitation.
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