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Stealth sirna duplex oligoribonucleotides

Manufactured by Thermo Fisher Scientific
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Stealth siRNA duplex oligoribonucleotides are synthetic, double-stranded RNA molecules designed for use in RNA interference (RNAi) experiments. They are engineered to target and silence specific genes of interest.

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4 protocols using stealth sirna duplex oligoribonucleotides

1

Silencing CXCR4 in Rabbit MSCs

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Rabbit MSCs were cultured as before. At about 60% confluence, MSCs were transfected with the stealth siRNA duplex oligoribonucleotides (Invitrogen Life Technologies, Carlsbad, CA, USA). The sequence of the stealth siRNA duplex oligoribonucleotides against CXCR4 is 5′- GCCCUCAAGACUACGGUCAUCCUUA -3′, and its corresponding complementary strand is 5′- UAAGGAUGACCGUAGUCUUGAGGGC -3′ (Invitrogen Life Technologies). A negative stealth siRNA sequence was used as a control. The CXCR4 siRNA was transfected transiently using LipofectamineTM RNAiMAX (Invitrogen Life Technologies) according to the manufacturer’s instructions. Briefly, siRNA plasmid (150 pmol) was diluted in 245 µL of Opti-MEMI (Gibco, Waltham, MA, USA) and the solution was gently mixed. Lipofectamine™ RNAiMAX (Invitrogen Life Technologies) was gently mixed and 4 µL of the reagent was then diluted in 246 µL of Opti-MEMI. Then, the diluted siRNA and the diluted LipofectamineTM RNAiMAX were combined for 20 min at room temperature to allow the formation of transfection complexes. The final volume of these solutions was 0.5 mL, and the final concentration of RNA was 40 nM. The complexes were then added to each well containing cells in six-well plates while they were in the quiescent state, and all were swirled gently to ensure uniform distribution. After incubation at 37 °C for 48 h, IF staining and WB were performed.
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2

Transfection and Knockdown of Planar Cell Polarity Genes

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Cells were transfected using Lipofectamine 2000 (Invitrogen, Life Technologies) according to the manufacturer’s instructions and incubated for 48 h before analysis. Expression plasmids for hPrickle1, hVangl2 and cDNA control were a kind gift (provided respectively by Dr. A. Bassuk at the University of Iowa and Dr. L. Braiterman at the Johns Hopkins University School of Medicine). Silencing RNA (siRNA) hairpins (Stealth siRNA duplex oligoribonucleotides) complementary to human Prickle1 and Vangl2 mRNAs were designed by Invitrogen. Alternative siRNA sequences (Santa Cruz Biotechnology, Dallas, Texas USA), complementary to human Prickle1 and Vangl2 mRNAs were used in confirmative transfection experiments. The siRNAs used were a pooled cocktail with three different siRNA sequences. β-catenin knockdown was achieved using the SignalSilence β-catenin kit (Cell Signaling Technology, Beverly, MA). Non-silencing siRNA was used as control (Cell Signaling Technology). The final concentration of RNA when added to the cells was 33 nM.
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3

Silencing of Human Pin1 Protein

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For the knockdown of human Pin1, the siRNAs against Pin1 (Pin1 shRNA-1: 5’-CGGCAACAGCAGCAGUGGUGGCAAA-3’ and Pin1 shRNA-2: 5’-GCCCUGGAGCUGAUCAACGGCUACA-3’) and control siRNA were purchased from Invitrogen (Stealth/siRNA duplex oligoribonucleotides), and transfected into LNCaP or DU145 cells using Lipofectamine RNAi Max (Invitrogen, CA), according to the manufacturer’s instructions.
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4

TOLLIP Regulation in Airway Cells

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TOLLIP gene in primary HBE and BEAS-2B cells was knocked down using Stealth siRNA duplex oligoribonucleotides specific for human TOLLIP (5’-CCAAGAAUUACGGCAUGACCCGCAU-3’; 5’-AUGCGGGUCAUGCCGUAAUUCUUGG-3’) obtained from Invitrogen. Scramble siRNA oligonucleotides were used as controls. Transfection of siRNA was performed using GenMute transfection reagent (SignaGen Laboratories). For transient overexpression of TOLLIP in BEAS-2B and primary HBE cells, TOLLIP-V5 plasmid was transfected into these cells using Lipofectamine 2000 (Invitrogen). To induce TOLLIP expression in the stable inducible BEAS-2B cells, the cells were treated with doxycycline (Sigma) at 2 μg/ml for 48 hours before experiment. Both overexpression and knocking down of TOLLIP protein in treated cells were confirmed by immunoblotting.
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