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14 protocols using 4 6 diamidino 2 phenylindole dapi

1

Visualizing H. pylori Infection in Cells

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After in vitro infection for 24 h, cells were fixed with 4% paraformaldehyde for 1 h, permeabilized with 0.1% Triton X-100 (Biosharp) for 30 min, and blocked with 1% FBS for 1 h. H. pylori, lipid rafts, cytoskeleton, and nucleus were stained with anti–H. pylori antibody (Biosharp), fluorescein isothiocyanate-labeled cholera toxin subunit B (FITC-CTX-B) (Absin), rhodamine-labeled phalloidin (Biosharp), and 4, 6-diamidino-2-phenylindole (DAPI) (Biosharp), respectively, and fluorescence signals were analyzed using a confocal laser scanning microscope (Carl Zeiss).
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2

Mesenchymal Stem Cell Characterization

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Neochlorogenic
acids were purchased from Selleck.
CD44-FITC, CD45-FITC, and CD90-FITC were purchased from Biolegend
(United States). CD34-FITC was purchased from Santa Cruz Biotechnology
(United States). Aggrecan, Nrf2, HO-1, Nqo-1, Actin, and Cy3 antibodies
were purchased from Affinity Biosciences (China).
Annexin V-fluorescein
isothiocyanate (FITC)/PI Apoptosis Detection Kit was purchased from
KeyGEN BioTECH (China). Reactive oxygen species assay kit and Mitochondrial
Membrane Potential Assay Kit with JC-1 and FITC Phalloidin were purchased
from Solarbio (China). GelMA hydrogel was purchased from Suzhou Yongqinquan
Intelligent Equipment Co., Ltd. Calcein-AM/PI Double Stain Kit was
purchased from Beyotime Biotechnology (China). 4′,6-Diamidino-2-phenylindole
(DAPI) and Cell Counting KIT 8 was purchased from Biosharp (China).
DMEM/F12 and fetal bovine serum were purchased from Procell (China).
Osteogenesis, adipogenesis, and chondrogenesis differentiation kits
were purchased from OriCell(United States). FreeZol reagent kit, Hiscript
II First Strand cDNA Synthesis kit, and SYBR qPCR Master Mix were
purchased from Vazyme Biotech (China).
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3

Hepatic Monocyte/Macrophage Immunofluorescence

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Hepatic monocyte/macrophages adhered to slides and were fixed by paraformaldehyde, followed by rinsing with PBS. The fixed monocyte/macrophages were permeabilized with 0.1% Triton X100 for 10 min and blocked with 5% donkey serum (100-151, Sacramento, CA, USA) for 1 h. Next, they were incubated with primary antibodies (CD14 MA1-23611, Invitrogen, Carlsbad, CA, USA), secreted phosphoprotein 1(SPP1) (ab8448, Abcam, Cambridge, UK), and CD68 (ab125212, Abcam, Cambridge, UK) overnight at 4 °C. After that, monocyte/macrophages were treated with secondary antibody (donkey anti-rabbit Alexa488, 1:300 dilution; donkey anti-mouse Alexa 568, 1:300 dilution; Invitrogen) for 30 min. Then, 4′,6-diamidino-2-phenylindole (DAPI;71010100, Biosharp, Hefei, China) was used to label nuclei. An anti-fluorescence attenuating agent (S2100, Solarbio, Beijing, China) was employed to mount the slides.
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4

Immunofluorescence Analysis of Autophagy

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Cells were seeded on Glass Bottom Cell Culture Dishes (NEST, 801007) and then the cells were exposed to treatments as indicated above for 48 hours. Cells were seeded with 4% paraformaldehyde, incubated with 0.1% Triton X-100 for 30 min, and then incubated with anti-LC3 antibodies (1:200) (CST, 2775S) overnight at 4°C. Next, cells were incubated with Cy3-labeled Goat Anti-Rabbit IgG (H+L) (1:200) (Beyotime, A0516) for 1 hour, washed with PBS. Then 4', 6-diamidino-2-phenylindole (DAPI) (Biosharp, C1002) were used to stain nuclei. Microscopy was done on a confocal laser microscopy (OLYMPUS, BX53).
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5

Immunofluorescence Staining of Cellular Markers

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Dehydrated and dewaxed sections were washed in PBS and epitopes were retrieved in antigen retrieval solution for 10 min at 100°C. Following washing with PBS, sections were incubated at room temperature for 1 h with 0.01 M PBS containing 5% NGS and 0.3% Triton X-100 to inhibit non-specific staining. Subsequently, sections were treated with primary antibodies (UCP2 1:50, Cytochrome b 1:50, Santa, United States; ATPase 1:100, Biorbyt, United States) in the blocking buffer at 4°C overnight. After thoroughly washing the sections, they were incubated with the appropriate secondary Cy 3-labeled anti-rabbit or anti-mouse antibodies in 0.01 M PBS at a 1:100 dilution at room temperature for 1 h in the dark. Sections were then washed three times in 0.01 M PBS and counterstained with a 1 μg/μL 4′, 6-diamidino-2-phenylindole (DAPI, Biosharp, China) solution before being mounted on slides using PermaFluor (Thermo Fisher Scientific). Stained samples were analyzed with a fluorescence microscope (BX51, Olympus Corporation).
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6

Hippocampal Tissue Preparation and Immunostaining

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Hippocampi were removed and prepared for dehydration using graded ethanol (70~90%), and immersion fixation in the mixture of dimethylbenzene and wax. Paraffin blocks were then cut into 5 μm sections and all slides were dried in an incubator at 60°C for 2 h, then dewaxed for 30 min and incubated in blocking buffer for 30 min at room temperature (20~24°C). Next primary antibodies against glial fibrillary acidic protein (GFAP, 1:50; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and BCL2L1, MMP-9 and CC3 (1:100; Bioss Technology, Beijing, China) were added and sections were incubated at 4°C overnight. After multiple rinses in phosphate-buffered saline, the sections were blocked with goat anti-mouse IgG and goat anti-rabbit IgG (1:200; Beyotime Institute of Biotechnology, Shanghai, China) and all the sections were stained with 4,6-diamidino-2-phenylindole (DAPI, Biosharp, Carlsbad, CA, USA) at room temperature (20~24°C). For double immunofluorescent analysis, the sections were imaged and photographed using a laser scanning confocal microscopy (Olympus, Tokyo, Japan).
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7

Fibroblast Identification in Hyperplastic Scars

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Immunofluorescence was performed to identify the fibroblasts isolated from hyperplastic scar tissues. Cells were seeded onto glass slide beforehand. When the confluence reached 70%, the cells were fixed with 4% paraformaldehyde (Sinopharm, Beijing, China) for 15 min and permeated with 0.1% Triton X-100 (Amresco, Solon, OH, USA) at room temperature for 30 min. After blocking with goat serum (Solarbio, Beijing, China) for 15 min, the cells were incubated with rabbit anti-Vimentin antibody (1:200, diluted with PBS) (Bioss, Beijing, China) at 4°C overnight. After rinsing with PBS, the cells were incubated with goat anti-rabbit immunoglobulin G (IgG) labeled with Cy3 (1:200, diluted with PBS) (Beyotime) at room temperature in dark for 60 min. After being counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (Biosharp, Hefei, Anhui, China), the cells were mounted in the presence of anti-fluorescence quenching agent (Solarbio), observed and photographed with a fluorescence microscope (Olympus, Tokyo, Japan) at 400× magnification.
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8

Spinal Cord Immunofluorescence Staining

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Spinal cord sections (5-μm thick) from each specimen were deparaffinized with xylene (2 ​× ​20 ​min), incubated in graded concentrations of ethanol (2 ​× ​anhydrous ethanol, 95%, 90%, 80%, and 70%), and washed thrice in phosphate-buffered saline (PBS). The sections were incubated in H2O2 for 15 ​min to block endogenous peroxidase, with a blocking solution (0.1% Triton X-100 in PBS and 10% goat serum) at room temperature for 1 ​h and finally with the primary antibodies overnight at 4 ​°C. The primary antibodies used were as follows: mouse anti-NeuN antibody (1:200, ab104225; Abcam, MA, USA) and goat anti–rat glial fibrillary acidic protein (GFAP) antibody (1:400, ab53554; Abcam, MA, USA). The sections were washed thrice with PBS and then incubated with secondary antibodies for 1 ​h at room temperature. After 3 rinses in PBS, the nuclei were counterstained with 1 ​g/ml 4′,6-diamidino-2-phenylindole (DAPI) (Biosharp, Hefei, China) for 5 ​min. The anti-fade mounting medium (Solarbio, Beijing, China) was placed on each slide. Immunofluorescence imaging was visualized using an Olympus fluorescence microscope (TH4-200; Olympus, Tokyo, Japan), and quantification was performed using ImageJ software (National Institutes of Health, US).
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9

Zirconium-Amine Coordination Polymer Synthesis

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All standard synthesis reagents were purchased from commercial suppliers and used without any further purification. ZrOCl2·8H2O, 2,5-dibromobenzenamine, 4-(methoxycarbonyl) phenylboronic acid, CsF, Pd(PPh3)4, RITC, and FITC were obtained from Energy Chemical. NaOH and CH3COOH were purchased from Sinopharm Chemical Reagent. INS, Tf, 4′,6-diamidino-2-phenylindole (DAPI), lysosome tracker, and the BCA kit were obtained from Bio-sharp (Hefei, China). MTT and Dulbecco’s modified Eagle’s medium (DMEM) were purchased from Wuhan Kerui Biotechnology Co. Ltd. The bovine INS ELISA kit was obtained from Jiangsu Meimian Industrial Co. Ltd.
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10

Immunofluorescence Visualization of Autophagy

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For immunofluorescence detection, hDPCs were seeded on top of coverslips in 12-well plates. After overnight incubation, the culture medium was changed into DMEM with 1 and 10% FBS and 1, 5, 10, and 20% PRP separately in different groups. After incubation for 24h, the cells were fixed in 4% paraformaldehyde, permeabilized with 0.5% Triton X-100, and blocked with 1% BSA. LC3B (1:500, Abclone, China) was added as primary antibody and incubated overnight at 4°C. Alexa Fluor 488 (Proteintech) green fluorescence conjugate goat anti-mouse was used as a secondary antibody (1:200). Alexa Fluor cy3 phalloidin red fluorescence conjugate (1:500) was then applied to mark the actin cytoskeleton, and subsequently, the DPSCs were treated with 4′, 6-diamidino-2-phenylindole (DAPI, 1:1,000, Biosharp, China). The coverslips were mounted on a microscope slide with an embedding medium and observed under a laser scanning confocal microscope. To investigate the effect of autophagy on immunofluorescence, cells were cultured in the presence of an inhibitor or agonist of autophagy.
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