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4 protocols using real time atp rate assay

1

Real-Time ATP Measurement in Cells

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Cells were plated at the optimal densities in the Seahorse XF 8-well plates 48/72 h before the measurement, subjected to the FF treatment for 24/48 h and incubated in the Seahorse XF Assay Media at 37 °C for 1 h without CO2, immediately before starting the Real-Time ATP Rate Assay (Seahorse Bioscience; North Billerica, MA, USA, 1 μM Oligo; 1 μM/0.5 μM Rot/AA). OCR and ECAR measurements were performed with the Seahorse Analyzer XF HS Mini/XFp software and normalized to cell numbers.
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2

Real-Time ATP Rate Assay in Cells

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Cells were plated in Seahorse XF eight-well plates 48/72 h before the measurement, subjected to DCX/MET/FF for 24/48 h, and incubated in Seahorse XF Assay Media at 37 °C for 1 h without CO2 immediately before starting the Real-Time ATP Rate Assay (Seahorse Bioscience; 1 µM oligomycin; 1 µM/0.5 µM rotenone/antimycin A). Oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) measurements were performed and analyzed with the Seahorse Analyzer XF HS Mini/XFp software and normalized to cell number.
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3

Metabolic Profiling Using Seahorse Analyzer

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Metabolic profiling of cells was undertaken using a Seahorse XFe24 Analyzer in XFe24 microplates.
Cells were seeded by suspension in the growth medium described above in the apart cell culture in a Seahorse XF24 Cell Culture Microplate (Agilent, Madrid, Spain 100777-004) and placed in the cell culture incubator for three hours to adhere. After cells attached, 150 µL of growth medium was added to each well. The cells were allowed to stand overnight in the cell incubator at 37 °C. The next day, the growth medium was replaced by Seahorse XF RPMI pH = 7.4 (Agilent, 103576-100), and either Real-Time ATP Rate Assay (Agilent, 103592-100) or Glycolytic Rate Assay (Agilent, 103344-100) was performed according to the manufacturer’s instructions.
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4

Real-time ATP Rate Assay of iPSM Cells

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The iPSM cells were dissociated with accutase for 5 min at 37 °C during the most efficient day of differentiation and re-seeded into fibronectin-coated Seahorse plates (Agilent) at a density of 7.27 x 105 cells per cm2 in 100 μL of Seahorse XF DMEM (Agilent) supplemented with 10 mM glucose (Agilent), 1 mM pyruvate (Agilent) and 2 mM glutamine (Agilent). Cells were allowed to attach at RT for 15 min and then transferred to a 37°C incubator without CO2 for 40 min. After that time, 400 μL of Seahorse XF DMEM medium at 37°C were added carefully to each well without disturbing the attached cells for a total of 500 μL. Cells were incubated at 37°C without CO2 for 15 more min. The Seahorse cartridge was hydrated overnight. For the real-time ATP rate assay (Agilent), 1 μM oligomycin, 0.5 μM rotenone and 0.5 μM antimycin A were used. All samples were run in seven to ten technical replicates in a Seahorse XFe24 (Agilent). Three biological replicates were performed for each species. The Wave Desktop and online app provided by the manufacturer were used for analysis.
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