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8 protocols using aldh1

1

Protein Expression Analysis by Immunoblotting

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Analysis of protein expression was performed by immunoblotting as described previously [7 ,8 (link)]. Western blots and were probed with the following antibodies: NRF1 (Rockland Immunochemicals Inc., Pottstown, PA, USA), Nanog (Cell Signaling Technology, Inc., Danvers, MA, USA), Vimentin (cat# AF2105, R&D System, Minneapolis, MN, USA), E-Cadherin (cat# ab15148, Abcam, Cambridge, MA, USA), N-Cadherin (cat# sc-8424, D-4, Santa Cruz Biotechnology, Inc., Dallas, TX, USA), CXCR4 (cat# sc-9046, H-118, Santa Cruz Biotechnology, Inc., Dallas, TX, USA), ALDH1 (cat # sc-22589, L-15, Santa Cruz Biotechnology, Inc., Dallas, TX, USA), and β-actin (13E5, rabbit mAb #4970, Cell Signaling Technology, Inc.). Electrochemiluminescence (ECL) intensity of detected target proteins was imaged and quantified with a Bio-Rad Versa Doc instrument. All immunoblots were completed a minimum of three times for each experiment.
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2

Knockdown of K-ras and ALDH1 in OSCC

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K-ras and ALDH1 were knocked down with duplex siRNA targeting K-ras (Santa Cruz Biotech) and ALDH1 (Santa Cruz Biotech), respectively. The cells were also transfected with scrambled siRNA (Santa Cruz Biotech) as the control. Transfection was carried out using Lipofectamine RNAiMAX (Invitrogen). OSCC cells (2 × 105) were plated in 60-mm dishes and transfected with 15 μg siRNA. Finally, the cultures were harvested after two days post-transfection for expression and functional analyses.
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3

Knockdown of K-ras and ALDH1 in OSCC

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K-ras and ALDH1 were knocked down with duplex siRNA targeting K-ras (Santa Cruz Biotech) and ALDH1 (Santa Cruz Biotech), respectively. The cells were also transfected with scrambled siRNA (Santa Cruz Biotech) as the control. Transfection was carried out using Lipofectamine RNAiMAX (Invitrogen). OSCC cells (2×105) were plated in 60-mm dishes and transfected with 15 μg siRNA. Finally, the cultures were harvested after two days post-transfection for expression and functional analyses.
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4

Comprehensive Protein Analysis of Pretreated Cells

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Cells were collected after 48 h of pretreatment with wogonoside. After rinsing, cells were treated with radioimmunoprecipitation assay lysis buffer, dissolving the protease inhibitors. Western blotting was performed according to the previous literature.19 (link) The primary antibodies were as follows: Ki-67, PCNA, E-cadherin, N-cadherin, fibronectin, VEGF, MMP-9, MMP-14, CD44, Bcl-2, Bax, SOX-2, ALDH1, Oct4, AKT, p-AKT, β-catenin, p-β-catenin, Actin, STAT3, p-STAT3, p65, p-p65, vimentin and CD133+. They were all obtained from Santa Cruz Biotechnology (USA). The relative protein level was analyzed by ImageJ software. The experiments were independently repeated in triplicate.
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5

Quantitative Protein Expression Analysis

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Total protein was isolated from human tissue samples and colorectal tumor cells using lysis buffer containing protease inhibitors (Pierce Biotechnology, Waltham, USA). Equal amounts of protein samples were separated on a 10% SDS-PAGE gel and then blotted with the following primary antibodies (Abcam unless indicated otherwise): FBXW11 (1 : 500; catalog number 137835), ALDH1 (1 : 500; catalog number 52492), Nanog (1 : 1000; catalog number 109250), Oct4 (1 : 1000; catalog number 181557), HIC1 (1 : 500; catalog number 271499, Santa Cruz Biotechnology), SIRT1 (1 µg/mL; catalog number 110304), and β-actin (internal control; 1 : 2000, catalog number 32572). After 1 h incubation with a secondary antibody (1 : 2000; catalog number 6721, Abcam), the blots were visualized by the AlphalmagerTM 2000 Imaging System (Alpha Innotech, San Leandro, USA). The band density was quantified using ImageJ.
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6

Western Blot Analysis of Stem Cell and Cancer Markers

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Whole cell lysates (50 μg) were separated by electrophoresis on 12.5% denaturing polyacrylamide gels. The membranes were incubated overnight at 4°C with primary antibodies (0.1 μg/ml) against Oct4, Nanog, β-AR and phospho EGFR were purchased from Abcam Corporation (Abcam, Cambridge, UK), Snail, Twist, Fibronectin, E-cadherin, CD21, CD44, CD133, ALDH-1, phospho AKT, phospho NFκB, α7-nAChR, Bcl-2 were acquired from Santa Cruz Biotechnology (Santa Cruz, CA). Bax was obtained from Becton, Dickinson and Company (BD, Transduction Laboratories TM), MDR-1 and ABCG2 were purchased from Millipore Corporation (Millipore Corporation, Billerica, MA, USA), caspase-3 and PARP were obtained from Invitrogen Corporation (Invitrogen, Camarillo, CA, USA) in Tris-Tween-Buffer-Saline buffer containing 3% non-fat milk. Subsequently, each membrane was washed and incubated for 1 h at 25°C with a secondary anti-mouse, anti-rabbit, or anti-goat antibody conjugated with horseradish peroxidase (1: 1000; Santa Cruz Biotechnology, Inc.), as previously reported. [25 (link)]
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7

Protein Expression Analysis of Stem Cell Markers

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The protein lysates were separated by 10%–15% SDS-PAGE and electrophoretically transferred to a PVDF (polyvinylidene difluoride) membrane (Millipore). The membrane was incubated with antibodies, Hes1 (Bioss), CD133 (Santa Cruz), ABCG2 (Santa Cruz), Nanog (Abcam), ALDH1 (Santa Cruz). Then the membrane was incubated with HRP-labelled goat-anti-mouse or rabbit IgG, and the proteins were detected by high sensitivity chemiluminescence imaging system (BIORAD). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as the protein-loading control.
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8

Notch1 and ALDH1 Protein Expression

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Cells were lysed in 1× RIPA buffer (Sigma). The samples were separated by SDS-PAGE and transferred to PVDF membranes. The primary antibodies of Notch1 (1:500), Hes-1 (1:200), and ALDH1 (1:200) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Relative protein expression levels were quantified by optical density analysis and normalized to GAPDH (1:1000; Santa Cruz).
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