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78 protocols using ab201015

1

Apatinib and Pemetrexed Combination Therapy

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Apatinib mesylate (Heng Rui) were grinded into powder and dissolved 0.5%CMC (Solrbio). Pemetrexed (Qi Lu) were dissolved 0.9% saline. Primary antibodies against AKT (ab8805), phospho‐AKT (ab8932), ERK (ab54230), phospho‐ERK (ab201015), mTOR (ab2732), phospho‐mTOR (ab84400), MEK (ab178876), phospho‐MEK (ab194754), HIF‐1α (ab51608), CD31 (ab28364), α‐SMA (ab5694), collagen IV (ab6586), MMP2 (ab37150), MMP‐9 (ab38898), and β‐actin (ab8227) were purchased from abcam. Primary antibodies against cleaved‐caspase3 (9664), ki67 (9449), and anti‐rabbit or anti‐mouse IgG horseradish peroxidase (HRP)‐linked secondary antibodies were purchased from Cell Signaling Technology.
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2

Comprehensive Protein Analysis Protocol

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The protein concentration in the supernatant was measured using a BCA protein assay (Beyotime, Shanghai, China). Protein from total cell lysates was extracted using RIPA buffer with a protease inhibitor cocktail (NO. C0001, TargetMol, Boston, MA, D r a f t USA) and phosphatase inhibitor cocktails (NO. C0002-C0004, TargetMol, Boston, MA, USA) at a proportion of 1:100, and proteins from the nucleus were extracted using a nuclear protein extraction kit (R0050, Solarbio). Samples were resolved by 8-10%
SDS-PAGE and transferred to PVDF membranes (Solarbio, Beijing, China).
Antibodies against PDGFRβ (1:1000, ab32570, Abcam), GLUT1 (1:100000, ab115730, Abcam), HK2 (1:1000, ab209847, Abcam), PFK1 (1:1000, ab181064, Abcam), HIF1α
(1:1000, ab51608, Abcam), LDHA (1:1000, ab101562, Abcam), β-actin (1:100000, AC026, ABclonal), c-Myc (1:1000, #13987, CST), PDK1 (1:1000, ab207450, Abcam),
Anti-PDGFRβ phosphor Y571 (ab218534, 1:1000, Abcam), PKM2 (ab150377, 1:1000, Abcam), Anti-phospho-ERK1/ERK2 (T202/T185) (1:1000, ab201015, Abcam), ERK1/2 (1:2000, A5029, Bimake), AKT (1:1000.A5525, Bimake), p-AKT (1:1000, A5030, Bimake), mTOR(ab32028, 1:1000, Abcam), p-mTOR (ab109268, 1:1000, Abcam) and PCNA (1:2000, A5324, Bimake) were used.
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3

Western Blot Analysis of Cell Signaling Proteins

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Protein samples from LECs of each group were added to SDS-PAGE and blotted onto PVDF membrane. Primary antibodies against p21 (ab109199; Abcam, 1 : 1000), CDKN2A/p16INK4α (ab211542; Abcam, 1 : 1000), Cyclin D1 (ab16663; Abcam, 1 : 1000), CDK4 (ab199728; Abcam, 1 : 1000), phosphorylated-ERK1/2 (ab201015; Abcam, 1 : 1000), ERK1/2 (ab184699; Abcam, 1 : 1000), BVRA (sc-393385; Santa Cruz, 1 : 1000), ERK2 (ab32081; Abcam, 1 : 1000), Nrf2 (ab92946; Abcam, 1 : 1000), HO-1 (ab68477; Abcam, 1 : 1000), GAPDH (ab8245; Abcam, 1 : 5000), and Histone H3 (ab1791; Abcam, 1 : 5000) were incubated with blots at 4°C overnight, followed by incubation with goat anti-mouse IgG H&L (ab150113; Abcam, 1 : 5000) or goat anti-rabbit IgG H&L (ab150077; Abcam, 1 : 5000) for 1 h at room temperature. GAPDH and Histone H3 were used as the quantitative loading control.
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4

Comprehensive Western Blot Methodology

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Western blot was performed as previously described20 (link). Antibodies used in this study were PDLIM1 (Affinity, DF3003), α-SMA (Affinity, AF1032), COL1A1 (Cell Signaling Technology, #91144), CTCF (Millipore, 07-729), TNF-α (Affinity, AF7014), IL-6 (Affinity, DF6087), p65(Affinity, AF5006), anti-p-Smad2/3 (Abcam, ab254407), anti-Smad2/3 (Abcam, ab202445), anti-p-ERK (Abcam, ab201015), anti-ERK (Abcam, ab184699), anti-p-P38 (Proteintech, 28796-1-AP), anti-P38 (Proteintech, 66234-1-Ig), anti-p-JNK (Proteintech, 80024-1-RR), anti-JNK (Proteintech, 66210-1-Ig), GAPDH (Cell Signaling Technology, #2118). Western blot analysis was performed on at least three independent biological replicates.
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5

Quantification of Protein Signaling Pathways

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Proteins from 16HBE cells were obtained and bicinchoninic acid assay was performed to detect the protein concentration. After that, equal quantity of proteins (50 µg) were solubilized in 5× sodium dodecyl sulfate (SDS)-sample buffer and separated on the SDS polyacrylamide gels (Thermo Fisher Scientific, Inc.). Separated proteins were then transferred onto a polyvinylidene fluoride membrane (EMD Millipore, Billerica, MA, USA). After blocking, the membranes were incubated with anti-IDO (dilution, 1:500; ab55305); anti-p-Raf-1 (dilution, 1:500; ab208449); anti-Raf-1 (dilution, 1:1,000; ab50858); anti-p-Mek1/2 (dilution, 1:1,000; ab194754); anti-Mek1/2 (dilution, 1:1,000; ab215263); anti-p-Erk1/2 (dilution, 1:1,000; ab201015); anti-Erk1/2 (dilution, 1:1,000; ab17942); anti-GAPDH (dilution, 1:1,000, ab8245; all from Abcam) antibodies overnight at 4°C. After that, horseradish peroxidase-conjugated secondary antibodies (bs-0293M; BIOSS, Beijing, China) were added and incubated at room temperature for 1 h. The results of all the assessments were evaluated by enhanced chemiluminescent reagents (EMD Millipore).
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6

Immunohistochemical Staining of Syncytin-1, p-MEK1/2, and p-ERK1/2

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IHC staining was performed according to the standard procedures using the following antibodies: Syncytin-1 (1:200, Abcam, ab179693), p-MEK1/2 (S218 + S222) (1:200, Abcam, ab194754), and p-ERK1 (T202)/ERK2 (T185) (1:200, Abcam, ab201015) were used as primary antibodies. The secondary antibody was Biotinylated goat anti-rabbit IgG (1:1000, CWBIO, cw0156s). Staining intensity was graded as 0 (negative), 1 (weak), 2 (moderate), 3 (strong), and 4 (very strong). Positive samples were scored as 2+, 3+, or 4+. Scores of 0 and 1+ were considered negative.
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7

Protein Isolation and Western Blot Analysis

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Total protein was isolated using RIPA buffer and separated by 10% SDS-PAGE. After transferring to PVDF membranes, the blot was incubated with specific antibodies. Primary antibodies were as follows: GALNT2 (abs117502; Absin, Shanghai, China), ITGA5 (abs101364; Absin), ERK1 + ERK2 (ab184699; Abcam, Shanghai, China), p-ERK1 (T202) + p-ERK2 (T185) (ab201015; Abcam), Akt (ab8805; Abcam), p-Akt (T308) (ab38449; Abcam), and GAPDH (Absin; abs132004). Immunoreactive bands were visualized using an enhanced chemiluminescence kit (Absin).
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8

Hippocampal Neurons Protein Analysis

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Hippocampal neurons were washed twice with ice-cold phosphate-buffered saline and then lysed with ice-cold lysis buffer (20 mM Tris-HCl (pH=7.5), 150 mM NaCl, 1 mM Na3VO4, 1 mM PMSF, 1 mM EDTA, 1% NP40, 50 mM NaF) for 30 min. Cell lysates were centrifuged at 10,000 x g for 15 min at 4°C. Cell lysates were separated by sodium dodecyl sulfate-polyacrylamide 12% gel electrophoresis and transferred to polyvinylidene fluoride membranes. Following incubation with blocking buffer (Tris-buffered saline + 0.1% Tween-20 (TBST) + 5% non-fat milk), membranes were probed with rabbit anti-Nrf2 polyclonal antibody, (1:1,000, ab31163 abcam, Cambridge, UK) mouse anti-ERK1+ERK2 polyclonal antibody (1:1,000, ab54230, abcam), rabbit anti-ERK1 (phospho T202) + ERK2 (phospho T185) antibody (1:1,000, ab201015, abcam) and mouse anti-GAPDH monoclonal antibody (1:2,000, ab8245, abcam) overnight at 4°C. The membranes were then washed with TBST and incubated with a horseradish peroxide-conjugated secondary antibody (1:1,000, 00001–2, ProteinTech Group, Inc., Chicago, IL, USA), and signals were detected with an enhanced chemiluminescent reagent (EMD Millipore, Billerica, MA, USA). Images were captured using a Bio-Rad VersaDoc 3000 (Bio-Rad Laboratories, Inc., Gladesville, NSW, Australia) and protein levels were quantified using Image-pro Plus 6.0 (Media Cybernetics, MD Rockville, USA).
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9

Protein Extraction and Western Blot Analysis

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Total proteins from cells were extracted using RIPA lysis buffer (Beyotime, Shanghai, China). Protein concentrations of all groups were determined by a BCA protein assay kit (Thermo Fisher Scienti c, Waltham, MA, USA). Proteins were separated by 10% SDS-PAGE, then transferred to PVDF membranes and incubated with speci c primary antibodies against t-ERK (ab184699, Abcam, Cambridge, UK), p-ERK (ab201015, Abcam, Cambridge, UK), and β-actin (10068-1-AP, Proteintech, Wuhan, China) overnight at 4°C. The membrane was incubated with HRP-labelled secondary antibody (Proteintech, Wuhan, China) for 1 h at room temperature. An enhanced chemiluminescence detection system (BIO-RAD, California, USA) was used to detect the protein bands.
Enzyme-Linked Immunosorbent Assay (ELISA)
Following appropriate CSE treatment and indicated transfection, the concentrations of interleukin-1β (IL-1β) and IL-6 from the culture supernatants of HBE cells were assayed using commercial the ELISA kits (Proteintech, Wuhan, China) referring to the manufacturer's protocols. The results represent as the average of three independent replicates.
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10

Western Blot Analysis of Signaling Proteins

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A total of 30 μg protein was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and electrotransferred onto polyvinylidene fluoride (PVDF) membrane (Millipore, USA). The membrane was incubated overnight with primary antibody after blocking with 5% skim milk. The primary antibodies were provided by Abcam Company, including anti-ERK (ab32537, 1 : 1000), anti-phospho-ERK (ab201015, 1 : 1000), anti-Nrf2 (ab62352, 1 : 1000), anti-polyadenosine-diphosphate-ribose polymerase (PARP) (ab120981, 1 : 1000), anti-GAPDH (ab8245, 1 : 1000), anti-HO-1 (ab52947, 1 : 1000), and anticatalytic subunit of glutamylcysteine ligase (GCLC) (ab207777, 1 : 1000). Membranes were subsequently incubated with appropriate HRP-conjugated secondary antibody at room temperature for 1 h. The bands were visualized using an enhanced chemiluminescence kit (PerkinElmer Life Science, Boston, MA, USA) and were scanned by a luminescence image analyzer (Fuji Film LAS-4000, Japan). The bands were measured with Image Gauge software.
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