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4 protocols using gtx125867

1

Antibody Detection Protocol for Viral Sensors

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The primary antibodies used in this study are as follows: goat polyclonal anti-SIDT2 (sc -54,151, Santa Cruz), mouse monoclonal anti-GFP (sc-9996, Santa Cruz), rabbit polyclonal anti-MDA5 (SAB3500356, Sigma Aldrich), mouse polyclonal anti-DDX58 (SAB1400461, Sigma Aldrich), rabbit monoclonal anti- Toll-like Receptor 3 (6961S, Cell Signaling), mouse monoclonal anti-β-actin (A5441, Sigma Aldrich) and rabbit polyclonal anti-JEV envelope protein (GTX125867, GeneTex). Rabbit polyclonal anti-LAMP2C antibodies were prepared as described previously [3 (link)]. The secondary antibodies used were horseradish peroxidase-conjugated rabbit anti-goat IgG (H+L) (305-036-003, Jackson ImmunoResearch), HRP-conjugated goat anti-mouse IgG (H+L) (31430, Thermo Scientific), and HRP-conjugated goat anti-rabbit IgG (H+L) (31460, Thermo Scientific).
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2

Plasmid Constructs and Antibodies for JEV

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The pcDNA3.1(−)-TIM-1 and pVAX1-NS1′ were preserved in our laboratory. JEV E gene was inserted into p3×FLAG-CMV-7.1. hTIM-D114A-His, hTIM-N115A-His, and hTIM-MD were cloned into pcDNA3.1 (+). hTIM-IgVD was cloned into pCAGGS. hTIM-ECD was inserted into prokaryotic expression vectors pET-28a (+) and pGEX. Mouse anti E monoclonal antibody was kept by our lab. Mouse anti-human TIM-1 monoclonal antibody (MAB1750, R&D systems, Minneapolis, MN, USA) and goat anti-TIM-1 polyclonal antibody (AF1750, R&D systems, Minneapolis, MN, USA) were used for detecting the TIM-1 protein in Western blot and IFA. Mouse anti-His antibody (66005-1-Ig, Proteintech, Rosemont, IL, USA) was used for the enrichment of TIM-1-His protein. Mouse anti-GAPDH polyclonal antibody (sc-25778, Santa Cruz, Dallas, TX, USA) was used for Western blot. Rabbit anti-JEV E polyclonal antibody (GTX125867, GeneTex, Irvine, CA, USA), rabbit anti-JEV NS3 polyclonal antibody (GTX125868, GeneTex, Irvine, CA, USA), and rabbit anti-JEV polyclonal prM antibody (GTX131833, GeneTex, Irvine, CA, USA) were used to detected the JEV E, NS3 and prM protein, respectively, in Western blot analyses. Donkey anti-goat IgG-Alexa Fluor488 (ab150129, Abcam, Cambridge, UK), donkey anti-rabbit IgG Alexa Flour 594 (ab150076, Abcam, Cambridge, UK), and donkey anti-mouse Alexa Flour647 (ab150107, Abcam, Cambridge, UK) were used for IFA.
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3

Monoclonal and Polyclonal Antibodies for DENV and ZIKV

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Monoclonal antibody 4G2 against the DENV E protein was produced from culture supernatants of hybridoma D1-4G2-4-15(ATCC HB-112, RRID:CVCL_J890). Mouse hybridoma producing monoclonal antibody 6F3.1 against DENV2 core protein was generously provided by John Aaskov (Queensland University of Technology)50 (link). Rabbit polyclonal antibodies against the ZIKV core protein, rabbit polyclonal antibodies against the JEV E protein, and mouse monoclonal antibodies against the JEV core protein were purchased from GeneTex (GTX133317, GTX125867 and GTX634153, respectively). Horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG and anti-rabbit IgG antibodies were obtained from Bio-Rad Laboratories (170-6516 and 170-6515, respectively).
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4

Antibody-based assay for JEV proteins

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Baby hamster kidney (BHK-21) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) containing 10% fetal bovine serum (FBS) at 37 °C with 5% CO2. The JEV SD12 strain was grown and titrated using a 50% tissue culture infective dose (TCID50) assay in BHK-21 cells. The commercial antibodies used in this study consisted of: mouse anti-HA monoclonal antibody (H9658, Sigma, St. Louis, MO, USA); rabbit anti-calnexin polyclonal antibody (C4731, Sigma); rabbit anti-Erlin-2 antibody (EPR8088, Abcam, Shanghai, China); mouse anti-β-actin monoclonal antibody (Proteintech Group, Chicago, IL, USA); rabbit anti-JEV C polyclonal antibody (GTX131368, GeneTex, St. Anthony, TX, USA); rabbit anti-JEV E polyclonal antibody (GTX125867, GeneTex); rabbit anti-JEV NS1 polyclonal antibody (GTX131370, GeneTex); mouse anti-JEV NS1 monoclonal antibody (GTX633820, GeneTex); rabbit anti-JEV NS2B polyclonal antibody (GTX125972, GeneTex); rabbit anti-JEV NS4A polyclonal antibody (GTX132028, GeneTex); and rabbit anti-JEV NS4B polyclonal antibody (GTX125865, GeneTex). Mouse anti-JEV prM polyclonal, mouse anti-JEV NS3 polyclonal, and rabbit anti-JEV NS5 polyclonal antibodies were prepared and preserved in our laboratory.
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