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56 protocols using ab18180

1

Immunohistochemical and Immunocytofluorescence Analysis

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For immunohistochemistry (IHC) analysis, tissue slides were deparaffinized and rehydrated through an alcohol series followed by antigen retrieval with sodium citrate buffer, blocked with 5% normal goat serum (Vector) with 0.1% Triton X-100 and 3% H2O2 in PBS for 60 min at room temperature and then incubated with appropriate primary antibodies against ALKBH5(1:1000, ab195377, Abcam), ABCA1(1:200, ab18180, Abcam), and Ki67 (1:1000, ab15580, Abcam) at 4 °C overnight. IHC staining was performed with horseradish peroxidase (HRP) conjugates using DAB detection. Nuclei were counterstained with Hoechst.
For immunocytofluorescence (IF), SKCM cells were first treated with 4% PFA for 15 min. The sections and cells were blocked with Immunol Staining Blocking Buffer (Beyotime) for 1 h and incubated with the primary antibody against ABCA1(1:200, ab18180, Abcam) overnight at 4 °C, then were incubated with Alexa Fluor secondary antibodies (Jackson ImmunoResearch, PA, USA) for 1 h. This was followed by incubation with a diamidinyl phenyl indole (DAPI) coloration for 10 min (Servicebio, China). Images were taken with the fluorescence microscope (IX83, Olympus, Japan).
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2

Western Blot and Immunofluorescence Assays

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For Western blot, the primary antibodies were as follows: rabbit anti AXL (1:500, bs-5180R, Bioss, Beijing, China), rabbit anti GAS6 (1:500, bs-7549R, Bioss), mouse anti GFAP (1:1000, MAB360, Millipore), rabbit anti CD68 (1:500, bs-0649R, Bioss), mouse anti ABCA1 (1:500, ab18180, Abcam, Cambridge, United Kingdom), rabbit anti IL-1β (1:500, ab9722, Abcam), rabbit anti TNFα (1:500, ab6671, Abcam), rabbit anti IL-6 (1:500, ab7737, Abcam), rabbit anti STAT1 (1:1000, 14994, CST), rabbit anti phospho-STAT1 (Tyr701) (1:1000, 9167, CST), and β-actin (1:1000, ab8227, Abcam). For immunofluorescence, the following antibodies were used: mouse anti GFAP (1:500, MAB360, Millipore), mouse anti NeuN (1:500, ab104224, Abcam), goat anti Iba-1 (1:500, ab5076, Abcam), rabbit anti AXL (1:500, bs-5180R, Bioss), rabbit anti GAS6 (1:500, bs-7549R, Bioss), and mouse anti ABCA1 (1:500, ab18180, Abcam). For flow cytometry, ACSA-2 antibody, anti-mouse, APC (1:50, 130-117-53, Miltenyi Biotec) and isotype control antibody, rat IgG2b, APC (1:50, 130-123-825, Miltenyi Biotec).
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3

Immunohistochemical Staining of Immune Markers

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Immunohistochemical (IHC) staining was conducted following standard procedures, which included fixation, deparaffinisation, hydration, antigen retrieval, blocking and incubation with primary antibodies (4°C overnight) and biotinylated secondary antibodies. The experiment utilised the following primary antibodies: anti‐CD68 (Abcam, ab283654), anti‐ABCA1 (Abcam, ab18180) and anti‐CD163 (Abcam, ab182422). IHC staining was evaluated as previously reported.
9 (link)
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4

Western Blot Analysis of Liver and Macrophage Proteins

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Mouse liver tissues or macrophages were lysed using RIPA lysis buffer (beyotime) to obtain the protein sample. After the protein concentration was measured using a BCA kit (beyotime), certain volume of protein was mixed with loading buffer (beyotime) for boiling water bath for 3 minutes for degeneration. The proteins were subjected to electrophoresis at 80 V for 30 minutes and then at 120 V for 1–2 hours. Membrane was transferred at a current of 300 mA for 60 minutes and then washed in washing buffer for 1–2 minutes before blocking at room temperature for 1 hou or at 4℃ for overnight. The membranes were incubated with one of the primary antibodies against GAPDH (ab181602, 1:10 000), ApoM (ab85695, 1:1000), FXR1 (ab129089, 1:1000), ABCA1 (ab18180, 1:200), ABCG1 (ab52617, 1:1000) and SR‐BI (ab217318, 1:2000) (Abcam) at shaking bed at room temperature for 1 hour before washing for 3 × 10 minutes. After that, the membranes were incubated with horseradish peroxidase–labelled goat anti‐rabbit IgG (1:5000; Beijing ComWin Biotech Co., Ltd) for 1 hour and washed for 3 × 10 minutes. The membranes were observed under a chemiluminescence imaging system (Bio‐rad) after development solution was added.
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5

Quantitative Western Blot Analysis of Cholesterol Regulators

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Protein lysates were collected at 4 °C in RIPA buffer (Sigma) supplemented with protease inhibitors (10uM leupeptin, 5ug/ml pepstatin A, 3ug/ml aprotinin, 25ug/ml ALLN, and 0.5mM PMSF). Conditioned growth medium was collected at 4 °C with protease/phosphatase inhibitors (Cell Signaling) and concentrated with Amicon Ultra-15 filters (30-kDa cut-off, EMD Millipore). Total protein concentration was determined by BCA method (ThermoFisher) and equal amounts of total protein were loaded onto 8% or 4–12% Bis-Tris Plus Gels (ThermoFisher). Following electrophoresis (100 V, 1h), proteins were transferred to iBlot® 2 Transfer Stacks, nitrocellulose membranes (ThermoFisher Scientific). Blots were probed overnight at 4 °C with 1:500 anti-HMG-CoA reductase (EMD Milipore, ABS229), 1:1,000 anti-APOE (Calbiochem, 178479), 1:200 anti-SREBP2 (Abcam, 30682), 1:1,000 anti-LAMP1 (Abcam, ab24170), or 1:700 anti-ABCA1 (Abcam, ab18180) followed by 1:2,000 HRP-conjugated secondary (Goat, life technologies, 611620; Rabbit, Vector Laboratories, PI-1000; Mouse, Vector Laboratories, PI-2000, 1 h at room temperature) and visualized with WesternBright™ ECL HRP Substrate reagents (Advansta) on the UVP System.
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6

Western Blot Analysis of Abca1 in Macrophages

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Total protein was isolated from peritoneal macrophages using the same procedure described previously [22 (link)]. Protein concentration was measured using a BCA Protein Assay kit (Beyotime Biotechnology, Jiangsu, China). Equal amounts of protein lysates were separated by SDS-PAGE and transferred to nitrocellulose membranes (Millipore, Billerica, MA, USA), followed by blocking with 5% skimmed milk at room temperature for 1 h. Subsequently, the membrane was incubated with the primary antibodies against Abca1 (ab18180, 1:1000; Abcam, Cambridge, MA, USA) and GAPDH (1:2000; Proteintech, Rosemont, IL, USA) at 4 °C overnight. After rinsing with PBS containing Tween for three times, the membrane was incubated with fluorescence-conjugated anti-rabbit IgG secondary antibody (1:10,000; Jackson Immuno Research, West Grove, PA, USA). Western blot bands were obtained by using the Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE, USA) and quantified with Odyssey v1.2 software (LI-COR Biosciences, Lincoln, NE, USA) by measuring the band intensity (area × OD) in each group and normalizing to GAPDH as an internal control.
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7

Cryogenic Preservation and Western Blot Analysis of Thoracic Aortic Tissue

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The thoracic aortic tissue was put into cryogenic vials, which were cryopreserved immediately in liquid nitrogen and stored at −80°C for use after completion of all sample collections.
The thoracic arteries (length 1.5  cm) were dissected and used to analyse the protein levels using Western blotting. Lysates (10–30 µg protein) were loaded onto 10% SDS-PAGE gels and blotted onto a polyvinylidene difluoride membrane. After being blocked with 5% powdered skim milk for 2 hours in phosphate-buffered saline containing 0.1% Tween 20 (PBST), the membranes were incubated with ABCA1 antibody (ab18180, Abcam, UK, 1:500), ABCG1 antibody (ab52617, Abcam, UK, 1:500) and LXRα antibody (ab41902, Abcam, UK, 1:500) overnight at 4°C, and then incubated with secondary antibody anti-rabbit/mouse-HRP (Santa Cruz Biotech, Santa Cruz, CA, 1:2000) for 1 hour at 37°C Image-Pro Plus 6.
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8

Protein Expression Analysis in Colorectal Tissue

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The colorectal tissue whole protein was extracted using a protein lysis buffer (P0013B, Beyotime, China). 50 μg of total protein was separated by 10% SDS‐polyacrylamide gel electrophoresis and then transferred onto 0.22 μm polyvinylidene fluoride membrane. Then blocked with 5% nonfat milk powder in TBST for 2 h at room temperature and incubated with the appropriate primary antibody at 4°C overnight. The primary antibodies and their dilution concentration were as follows: anti‐SR‐B1 (1:1000, NB400‐104, Novus Biologicals, USA), anti‐LDL‐R (1:1000, K009497P, Solarbio, China), anti‐PD‐L1 (1:1000, K009918P, Solarbio, China), anti‐GAPDH (1:2500, E12‐052, EnoGene, China), anti‐ABCA1 (1:1000, ab18180, Abcam, UK), anti‐HLA‐B (1:1000, K009916P, Solarbio, China), and anti‐β‐Actin (1:2500, #21338, SAB, USA). Subsequently, the membranes were washed with 1 × TBST and incubated with secondary antibodies: Goat anti‐Mouse or anti‐Rabbit IgG (1:10000) for 1 h at room temperature. After the membranes were washed again by 1 × TBST buffer, the proteins were visualized using enhanced chemiluminescence.
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9

Antibody Sources for Plin1 and Plin2

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Polyclonal antibodies against Plin1 or Plin2 [7 (link), 8 (link), 10 (link), 16 (link)] were gifts from the laboratory of C. Londos (US National Institutes of Health). This Plin1 antibody was used for immunostaining and another anti-Plin1 antiserum from Abcam (#ab3526) was used for immunoblotting. The sources of other antibodies used were listed as follows: rabbit anti-ATGL from Cayman Chemical (Cat# 10006409), rabbit anti-HSL from Cell Signaling Technology (Cat# 4107s), rat anti-CD36 from (R&D, MAB1955), mouse anti-ABCA1 (Abcam, ab18180), and mouse monoclonal anti-CD68 (Abcam, #ab955),
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10

Investigating Lipid Metabolism Regulation

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Rosmarinic acid (536954), metformin hydrochloride (PHR1084), 2-mercaptoethanol (M3148-25ML), protease inhibitor cocktail (P8340-5ML), and antibody against β-actin (a2066) were purchased from Sigma-Aldrich (St. Louis, MO, USA). A mouse IL-1β ELISA kit (ab100704) and antibodies against ABCA1 (ab18180), LDL-R (ab52818), and carnitine palmitoyltransferase 1A (CPT1A; ab53532) were purchased from Abcam (Cambridge, UK). Antibodies against p-AMPKαThr172 (#2531) and AMPK (#2532) were purchased from Cell Signaling Technology (Beverly, MA, USA). An antibody against ABCG5 (bs-5013R) was obtained from Bioss Antibodies (Woburn, MA, USA). Antibodies against ABCG8 (NBP1-71706) and SR-BI (NB400-104) were procured from Novus Biologicals (Littleton, CO, USA). Anti-cholesterol 7 alpha-hydroxylase A1 (CYP7A1) antibody (PA5-100892) was purchased from Invitrogen (Waltham, MA, USA). Accu check (code 222) was obtained from Roche Diagnostics (Mannheim, Germany). A cholesterol fluorometric assay kit (10007640) and triglyceride colorimetric assay kit (10010303) were procured from Cayman Chemical (Ann Arbor, MI, USA).
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