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32 protocols using ab181606

1

Protein Expression Analysis in H9c2 Cells

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Proteins in H9c2 cells were extracted by lysis buffer (P0013J, Beyotime). After determining the concentration with a BCA detection kit (P0012, Beyotime), the proteins were loaded and electrophoresed on 10% SDS polyacrylamide gel (P0012AC, Beyotime), and then transferred onto PVDF membranes (FFP26, Beyotime,). After using 5% non-fat milk to block membranes for 60 min at 37°C, the following primary antibodies were incubated with membranes overnight at 4°C: Bcl-2 (ab59348, 1:1000, 26 kDa, Abcam, USA), Bax (ab32503, 1:1000, 21 kDa, Abcam), Cleaved caspase-3 (ab49822, 1:500, 17 kDa, Abcam), iNOS (ab3523, 1:200, 135 kDa, Abcam), Cox-2 (ab15191, 1:250, 69 kDa, Abcam), CDK4 (ab199728, 1:2000, 34 kDa, Abcam), Cyclin D1 (ab16663, 1:25, 36 kDa, Abcam), HSP70 (ab181606, 1:1000, 70 kDa, Abcam), and GAPDH (ab181602, 1:10000, 36 kDa, Abcam). Following extensive washing, protein bands were incubated with the secondary antibody: Goat Anti-Rabbit IgG H&L (HRP) (ab205718, 1:2000, 42 kDa, Abcam) at 37°C for 2 h. The detection of signal was performed according to a standard ECL method (27), and analysis software (Image J 1.5i, National Institutes of Health, USA) was used for images to measured protein expression. GAPDH was used as housekeeping gene.
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2

Immunohistochemical Analysis of Hsp70

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Five μm paraffin sections were treated with H2O2, washed in tris buffer saline, and incubated with rabbit anti-rat Hsp70 antibody (Heat shock protein 70, ab181606, Abcam, UK), a molecular chaperone that is expressed in response to stress. Nonspecific protein binding sites were blocked with normal goat anti-rabbit antibody (1 h), followed by the Avidin-Biotin Complex (1 h), DAB (10 min), and finally hematoxylin counterstained sections [46 ].
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3

Extracellular Vesicle Protein Analysis

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The sEV-enriched supernatant was denatured in 5× sodium dodecyl sulfonate (SDS) buffer and used for Western blotting (10% SDS-polyacrylamide gel electrophoresis; 10–30 µg protein/well). Antibodies against the following were used: CD63 (sc-5275; Santa Cruz Biotechnology, Dallas, TX, USA), HSP70 (ab181606; Abcam, England), TSG101 (ab125011; Abcam, England), and calnexin (10427-2; Proteintech, Rosemont, IL, USA). The wet rotation method was used, and the membrane was completely immersed in 3% bovine serum albumin (BSA)-TBST and gently shaken at room temperature for 30 min. The primary antibody was diluted with 3% bovine serum albumin (BSA)- Tris-buffered saline Tween (TBST), incubated at room temperature for 10 min, and placed at 4 °C overnight. On the next day, the membrane was incubated at room temperature for 30 min, followed by washing with TBST 5 times for 3 min each time, followed by incubation with the secondary antibody. Electrogenerated chemiluminescence reagents were added to the membranes, and signals were detected by an automatic chemiluminescence imaging system (Tanon 4600; Tanon Co., Ltd., Shanghai, China).
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4

Quantitative Western Blot Analysis

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The total protein was extracted from tissues or cells with radioimmunoprecipitation assay lysis buffer (R0010, Solarbio), with the concentration determined by BCA Kit (20201ES76, YEASEN Biotech Co., Ltd., Shanghai). After separation by polyacrylamide gel electrophoresis, the protein was transferred to the PVDF membrane by wet transfer method. The membrane was sealed with 5% BSA at room temperature for 1 h, probed with the primary antibodies to CMTM7 (#PA5-103744, 1:1000, Thermo Fisher), EGFR (ab52894, 1:1000, Abcam), p-EGFR (ab40815, 1:1000, Abcam), AKT (ab8805, 1:500, Abcam), p-AKT (ab8933, 1:500, Abcam), VEGF (ab32152, 1:1000), CD63 (ab134045, 1:1000, Abcam), Hsp70 (ab181606, 1:1000, Abcam), TSG101 (ab125011, 1:2000, Abcam), and Calnexin (ab133615, 1:1000, Abcam) at 4 °C overnight. The next day, the membrane was re-probed with HRP labeled goat anti-rabbit IgG (ab205718, 1:10,000, Abcam) for 1 h at room temperature, developed by VILBER FUSION FX5 (VILBER LOURMAT, France). Image J 1.48u software (National Institutes of Health) was used for protein quantitative analysis, and the gray value of each protein was compared with the gray value of internal reference GAPDH.
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5

Western Blot Analysis of Protein Markers

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Protein samples were prepared in RIPA lysis buffer (Abcam, ab156034 with protease inhibitor cocktail). The protein concentration of the samples was tested with a BCA protein assay kit (Abcam, ab102536). Aliquots of 20 μg protein was fractionated with 10% SDS-PAGE gel and transferred to nitrocellulose membranes. The membranes were blocked in 5% skimmed milk, dissolved in PBST (0.5% Tween-20) buffer for 2 h at room temperature, and incubated with the following primary antibodies: rabbit anti-TSG101 (Abcam, ab125011, 1/1000), mouse anti-HSP70 (Abcam, ab181606, 1/1000), rabbit anti-E-cadherin(ab15148) (1/500), or rabbit anti-Vimentin (ab92547) (1/1000) at 4°C overnight. Secondary antibodies (1/1000) were subsequently incubated with the membranes at room temperature for 1 h. Positive staining was visualized on X-ray films with Pierce enhanced chemiluminescent visualization reagents.
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6

Exosome Protein Extraction and Analysis

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The Mixed RIPA buffer (R0010, Solarbio, Beijing, China) with phenylmethanesulfonyl fluoride (PMSF) (P0100, Solarbio) at 100:1 was used to lysis cells and exosomes. The extracted proteins were quantified using the BCA Protein Assay Kit (C503021, Sangon Biotech, Shanghai, China). The antibodies used in Western blot includes rabbit anti-human CD9 (ab263019, 1:1,000, Abcam), CD63 (ab134045, 1:2,000, Abcam), HSP70 (ab181606, 1:1,000, Abcam), TSG101 (ab125011, 1:2,000, Abcam), IRAK-1 (ab180747, 1:1,000, Abcam), TRAF-6 (ab33915, 1:2,000, Abcam), GAPDH (D110016, 1:5,000, Sangon Biotech), and horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG (D110058, Sangon Biotech). The relative expressions of the target proteins were normalized to GAPDH.
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7

Exosome Protein Characterization Protocol

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Samples (2 μL) were transferred onto a polyvinyl membrane, blocked for 45 min in 5% bovine serum albumin (BSA) solution in Tris-saline buffer (20 mm Tris-HCl, 150 mm NaCl, pH 7.5), then incubated in BSA solution (0.1%) and tween-20 (0.05%) in Tris-saline buffer with primary antibodies to the CD63 (ab68418, Abcam, Cambridge, MA, USA), CD9 (ab18241, Abcam, Cambridge, MA, USA), HSP70 (ab181606, Abcam, Cambridge, MA, USA), CANX (ab238078, Abcam, Cambridge, MA, USA), and HAS (4T24, HyTest, Turku, Finland) at a dilution of 1:5000 at +4 °C overnight. Blots were visualized using secondary antibodies conjugated with peroxidase (ab6721 and ab6789, Abcam, Cambridge, MA, USA), a Pierce ™ ECL Western Blotting Substrate kit (Thermo Fischer Scientific, Waltham, MA, USA) on an IBright FL1000 apparatus (Thermo Fischer Scientific, Waltham, MA, USA).
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8

Exosome Protein Profiling by Western Blot

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Cells or exosomes were lysed in radioimmune precipitation assay (RIPA) lysis buffer (Beyotime) containing protease inhibitor cocktails (Abcam). Protein concentration was determined with BCA Protein Assay Kit (Beyotime, China). A total of 20–30 μg of protein sample was subjected to SDS-PAGE gel, then transferred onto 0.22-mm polyvinylidene difluoride (PVDF) membranes (Millipore). The membrane was blocked in 5% non-fat milk for 2 h at room temperature and incubated with the corresponding primary antibodies at 4°C overnight, following by incubation with the horseradish peroxidase-conjugated (HRP) secondary antibody for 2 h at room temperature. Finally, the membrane was detected using FDbio-Femto ECL (Fudebio, Hangzhou, China) and a chemiluminescence system (Bio-Rad, USA). The primary antibodies for Western blot were anti-GAPDH (1:10,000; proteintech, 60004-1-Ig), anti-CD9 (1:1000; abcam, ab263019), anti-PTEN (1:1000; abcam, ab267787), anti-HSP70 (1:1000; abcam, ab181606) and anti-Calnexin (1:1000; abcam, ab133615), respectively.
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9

Profiling Extracellular Vesicle Proteins by Western Blot

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Cells cultured in Matrigel were collected and lysed with RIPA buffer (MCE) containing protease and phosphatase inhibitors (MCE). Protein concentrations were determined by the BCA Protein Assay Kit (23227, Thermo Fisher Scientific). Western blotting was conducted according to a standard protocol. Briefly, the proteins were loaded on 10% SDS-polyacrylamide gels and electrophoretically transferred to a PVDF membrane (Millipore). The primary antibodies were purchased as follows: p-Akt (1:1000, ABclonal, AP0637), Akt (1:1000, ABclonal, A17909), p-GSK3β (1:1000, ABclonal, AP1088), GSK3β (1:1000, ABclonal, A6164), β-CATENIN (1:1000, ABclonal, A19657), β-actin (1:1000, ABclonal, AC026), anti-CD9 (1:1000, Abcam, ab263019), anti-CD81 (1:1000, Abcam, ab109201), anti-Hsp70 (1:1000, Abcam, ab181606), anti-TSG101 (1:1000, Abcam, ab125011), anti-Calnexin (1:1000, Abcam, ab133615), anti-CD63 (1:1000, Abcam, ab134045). Detection was performed using a Chemiluminescent Western Blot detection kit (4AW012-1000, 4A Biotech). The western blot results were analyzed using ImageJ (version 1.52). Uncropped and unprocessed scans of the blots could be obtained from the source data file.
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10

Characterizing Extracellular Vesicle Structure

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The cup-shaped membrane structure of EV was identified by transmission electron microscopy (HT7700, Hitachi Ltd., Japan). The positive EV markers CD63 (1:400, sc-5275, Santa Cruz Biotechnology Inc.), HSP70 (1:1000, ab181606, Abcam), and TSG101 (1:1000, ab125011, Abcam) and the negative marker calnexin (1:750, 10427, Proteintech) were analyzed by Western blotting. Nanoparticle tracking analysis (NTA) was performed using a Zeta View PMX 110.
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