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5 protocols using 20 hete d6

1

Eicosanoid Extraction from Platelet Concentrate

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An aliquot of platelet concentrate (1 mL) was transferred into a 15 mL Falcon tube for two different treatment types. Ice cold ethanol (EtOH) (4 mL) was added, containing 10–100 nM of each internal standard (12S-hydroxyeicosatetraenoic acid (HETE)-d8, 15S-HETE-d8, 5-oxo-eicosatetraenoic acid (ETE)-d7, 11,12-dihydroxy-5Z,8Z,14Z-eicosatrienoic acid (DiHETrE)-d11, prostaglandin E2 (PGE2)-d4, 20-HETE-d6 (Cayman Chemical, Tallinn, Estonia), for protein precipitation over night at −20 °C. The samples were then centrifuged for 30 min at 4536× g and 4 °C, protein pellets were discarded, and EtOH was evaporated via vacuum centrifugation at 37 °C until the original sample volume was restored. Solid-phase extraction (SPE) was performed with 30 mg/mL StrataX SPE columns (Phenomenex, Torrance, CA, USA). The columns were washed with 2 mL absolute methanol (abs. MeOH) equilibrated with 2 mL MS grade H2O before sample loading with Pasteur pipettes. The samples were washed with 5 mL MS grade H2O before eluting the eicosanoids into 1.5 mL glass vials with 500 µL abs. MeOH containing 2% formic acid (FA). The eluates were stored at −80 °C until further analysis. Before measurement, the organic phase was evaporated at room temperature using nitrogen steam and reconstituted in 150 µL reconstitution buffer (H2O/acetonitrile (ACN)/MeOH + 0.2% FA—65:31.5:3.5).
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2

Fatty Acid and Enzyme Reagent Protocol

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Lauric, decanoic and stearic acids, and 5-aminolevulinic acid hydrochloride were purchased from Acros Organics (Fair Lawn, NJ). The 11-hydroxylauric and 12-hydroxylauric-d20 acid standards were purchased from Santa Cruz Biotechnology. The 12-hydroxylauric, palmitic and arachidonic (oil) acids, clotrimazole, imidazole, tert-butyl (tBPH), and cumene hydroperoxides (CuOOH) were obtained from Sigma-Aldrich (St Louis, MO). Myristic acid and econazole were purchased at VWR International, and ketoconazole was from Toronto Research Chemicals. Oleic acid and miconazole were obtained from Thermo Fisher Scientific. Ampicillin, arachidonic acid sodium salt, 18-HETE, 19(S)-HETE, 20-HETE, and 20-HETE-d6 were all purchased from Cayman Chemical. Isopropyl-β-D-1-thiogalactopyranoside (IPTG), phenylmethanesulfonylfluoride (PMSF), glucose-6-phosphate, and β-nicotinamide adenine dinucleotide phosphate (NADP+) were obtained from Alfa Aesar. glucose-6-phosphate dehydrogenase, the spinach Fdx and FdR were purchased from Sigma-Aldrich. All other chemicals and solvents were obtained from standard suppliers and were of reagent or analytical grade.
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3

Quantification of Eicosanoid Metabolites

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Plasma and homogenized tissue (kidney and liver) samples were subjected to alkaline hydrolysis and solid-phase extraction was performed as described previously [41 (link)]. 10 ng of each 20-HETE-d6, 14,15-EET-d8, 14,15-DHET-d11, and 15-HETE-d8 (Cayman Chemicals, Ann Arbor, MI, USA) served as internal standards. Subsequent analysis of the endogenous eicosanoid profiles was performed by liquid chromatography tandem mass spectrometry (LC-MS/MS; Lipidomix GmbH, Berlin, Germany) as established previously [42 (link)]. Results are given in ng metabolites per ml plasma or per g of organ wet weight.
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4

Reagents and Materials for CYP4F2 Assay

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Reagents used in this study were purchased from the following sources: AA, 20-hydroxy arachidonic acid (20-HETE), and 20-HETE-d 6 were from Cayman Chemical (Ann Arbor, MI, USA); reduced β-nicotinamide-adenine dinucleotide phosphate (NADPH) was from Oriental Yeast (Tokyo, Japan); polyclonal anti-human CYP4F2 antibody (PA5-27769) was from Invitrogen (Carlsbad, CA, USA); horseradish peroxidase (HRP)-conjugated goat anti-rabbit IgG was from ProteinSimple (Tokyo, Japan); dimanganese decacarbonyl (DMDC) was from Sigma-Aldrich (St Louis, MO, USA); and sodium cyanide and horse heart cytochrome c were from Nacalai Tesque (Kyoto, Japan). All other chemicals and reagents were of the highest quality commercially available.
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5

Oxylipidomic Measurements Utilization

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Chemicals used for this study were of following origin: Arachidonic acid (AA) and standards of 15-HETE, 12-HETE, 5-HETE, 12-HEPE, 15-HEPE, 14-HDHA, 17-HDHA, 13-HODE, 13-HOTrE) from Cayman Chem.; sodium borohydride from Life Technologies, Inc. (Eggenstein, Germany); restriction enzymes from ThermoFisher (Schwerte, Germany); isopropyl-β-thiogalactopyranoside (IPTG) from Carl Roth GmbH (Karlsruhe, Germany); E. coli (strain Rosetta2 DE3 pLysS) from Novagen (Merck-Millipore, Darmstadt, Germany). Oligonucleotide synthesis was carried out at BioTez Berlin Buch GmbH (Berlin, Germany). Nucleic acid sequencing was performed at Eurofins MWG Operon (Ebersberg, Germany). HPLC grade solvents and water were purchased from Fisher Scientific (New Hampshire, USA). The origin of other chemicals employed in this study is specified in the description of the methods. The following chemicals were used for oxylipidomic measurements: Deuterated standards (LTB4-d4, 20-HETE-d6, 15-HETE-d8, 13-HODE-d4, 14,15-DHET-d11, 9,10-DiHOME-d4, 12,13-EpOME-d4, 8,9-EET-d11, PGE2-d4; 10 ng/ml each) from Cayman Chem. (Ann Arbor, USA); acetonitrile, solvents from Merck (Darmstadt, Germany) and Fisher Scientific (Schwerte, Germany).
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