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73 protocols using anti lamin a c

1

Protein Expression Analysis in Cell Lines

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Human HEK293 and HepG2 cell lines (ATCC, Manassas, VA, USA) were cultured in DMEM HG (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), supplemented with 10% fetal bovine serum (FBS, Invitrogen, Thermo Fisher Scientific), 100 U/mL benzylpenicillin, 100 mg/L streptomycin (Gibco), and cultured in a humidified incubator with 5% CO2 at 37 °C. Total and fractionated cell protein extracts were obtained and analyzed as previously reported [36 (link),37 (link)]. The efficiency of the nuclear and cytosolic separation was tested through immunoblotting of LAMIN A/C and LDH, respectively. The following primary antibodies were employed: anti-p57 (mouse monoclonal), anti-p57 (rabbit polyclonal), anti-LAMIN A/C (mouse monoclonal), anti-LDH (mouse monoclonal), and anti-β-actin (mouse monoclonal), all purchased from Santa Cruz Biotechnology, Inc., Heidelberg, Germany.
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2

Immunoprecipitation and Western Blot Markers

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CHIP grade rabbit anti-GFP (Invitrogen) was used for co-immunoprecipitation and mouse anti-GFP (clontech) for Western-blotting. Rabbit anti-vATPase A (Abcam), anti-vATPase B (Abcam) or anti-LAMTOR1 (Sigma) were used for co-immunoprecipitation and Western blotting. Anti-Sec. 61b (Millipore) was used as a loading control in Western-blotting. HRP-coupled anti-mouse and anti-rabbit (Invitrogen) and TrueBlot anti-rabbit (Rockland) were used for Western-blotting and detected using ECL kit (GE Healthcare). For cell labelling, we used anti-LAMP1 (rabbit, NEB), anti-Giantin (rabbit, Covance), anti-LaminA/C (mouse, Santa Cruz), and MitoTracker, LysoTracker Red, Dextran TRITC 10,000 and Transferrin647 were purchased from Thermofisher.
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3

Nrf2-Mediated Antioxidant Response in HaCaT Cells

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The human keratinocyte cells (HaCaT) were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). HaCaT and HaCaT-ARE (stably transfected with 3xARE-luciferase gene) [23 (link)] cells were maintained at 37 °C in a humidified atmosphere of 5% CO2/95% air in RPMI1640 supplemented with 10% heat-inactivated FBS and 50 U/mL penicillin/streptomycin mixture (Invitrogen, Carlsbad, CA, USA). MCR was kindly provided by Dr. Heejung Yang of the Kangwon National University. For western blotting, anti-Nrf2 (Cat: ab137550, Abcam, Cambridge, MA, USA), anti-HO-1 (Cat: ab68477, Abcam), anti-Lamin A/C (Cat: sc20681, Santa Cruz Biotechnology, Santa Cruz, CA, USA), and GAPDH (Cat: sc25778, Santa Cruz Biotechnology) were used.
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4

Immunoblotting and Immunoprecipitation Protocol

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Immunoblotting and immunoprecipitation were performed as previously described52 (link). Anti-MSK1, anti-Aurora B, anti-β-actin, anti-NFATc2, anti-GADPH, anti-α-tubulin, anti-laminA/C were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-p-H3S10 and anti-H3 were from Active Motif (Carlsbad, CA, USA). Anti-STAT3, anti-AKT, anti-p42/44, anti-p-STAT3 Y705, anti-p-STAT3 S727, anti-p-AKT S483, anti-p-p42/44 were from Cell Signaling Technology (Danvers, MA, USA).
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5

Proximity Ligation Assay for Protein Interactions

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Proximity Ligation Assay (PLA) experiments was performed using kits from Sigma-Aldrich: Duolink® in situ Detection Reagents Orange (DUO92007). Briefly, methanol-fixed cells were saturated with saturated 4%-BSA and incubated with anti-lamin A/C (Santa Cruz sc-376248) and anti-P53BP1 (Cell Signaling 4937) primary antibodies overnight at 4°C. Thereafter, slides were incubated for 1 h at 37°C with secondary antibody-conjugated PLA probe. Ligation solution was added to each sample and slides were incubated in a humidity chamber for 30 min at 37°C. Ligation solution was removed with washing buffer and amplification solution was added. Slides were incubated in a humidity chamber for 100 min at 37°C and then washed with wash buffers. DNA was counterstained with DAPI and samples were observed by a Nikon Eclipse Ni fluorescence microscope equipped with a digital CCD camera and NIS Elements AR 4.3 software. Quantitative analysis was performed using Duolink Image Tool software (Sigma) by counting 300 nuclei per sample.
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6

Immunoprecipitation and Immunoblotting Analysis

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Immunoprecipitation and imunoblotting were performed as described previously [26 (link)]. The reagents were as following: anti-β-catenin (BD Bioscience, Cat# 610153), anti-γ-catenin (BD Bioscience, Cat# 610253), anti-CBP (Santa Cruz, clone SC-369), anti-p300 (Santa Cruz, clone SC-584), anti-activated- β-catenin (Millipore, clone 8E7), anti-lamin A/C (Santa Cruz, SC-7293), NE-PER Nuclear extraction reagent (Pierce, Cat#78833), Protease inhibitor cocktail (Calbiochem, Cat#539137), Protein A-agarose (Roche, Cat#11134515001), Illustra microspin columns (GE Healthcare, Cat#27-3565-01), ECL Plus (GE Healthcare, Cat#RPN 2132), and Blue ultra autorad film (BioExpress, Cat# F9029-8X10).
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7

Probing Cell Signaling Pathways

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Primary antibodies used in this study were anti-beta actin (Abcam, ab8224), anti-ERK1/2 (Cell Signaling, 9102), anti-phospho ERK1/2 (Cell Signaling, 9101), anti-lamin A/C (Santa Cruz, sc-7292), anti-lamin B1 (Santa Cruz, sc-30264), anti-S6 kinase (Cell Signaling, 2317), anti-phospho S6 kinase (Cell Signaling, 2211) and anti-LAP1 (Atlas antibodies, HPA050546).
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8

Progerin and Lamin A/C Immunofluorescence

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Fibroblasts were seeded into 4 chamber-well slides (SPL Lifesciences, Korea). Cells were fixed for 15 minutes (RT) in a 4% paraformaldehyde +2% sucrose solution and then permeabilized for 3 minutes at RT using permeabilization buffer (0.5% Triton X-100, 50 mM NaCl, 300 mM sucrose, 20 mM HEPES pH 7.5, 3 mM MgCl2). Cells were then incubated with primary antibodies for 40 minutes at 37 °C (anti-progerin (1/50, sc-81611) and anti-lamin A/C (1/50, sc-20681), Santa Cruz Biotechnology). After washing, cells were incubated for 20 minutes at 37 °C with secondary antibodies (A11001, A11012, 1/400 Life Technologies). Nuclei were stained with DAPI for 10 minutes at room temperature (0.1 μg/mL, Thermofisher). Slides were mounted using FluorSave™ reagent (Merck Millipore) and observed on a fluorescence microscope (ApoTome.2 Zeiss).
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9

Antibody Panel for DNA Damage Response

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Following antibodies were used in this study at the indicated concentration. Anti-phospho histone H2AX (Ser139) (γH2AX) (clone JBW301, EMD Millipore, 05–636, 1:1500 IF) (Cell Signaling Technologies, 2577, 1:1000 IF), anti-TOPBP1 (Bethyl Laboratories, A300–111A, 1:2000 IF, 1:2000 IB) (Abcam, ab2402, 1:1000 IF), anti-MDC1 (Abcam ab11171, 1:1000 IF, 1:1000 IB), anti-CIP2A (clone 2G10–3B5; Santa Cruz sc80659, 1:500 IF, 1:1000 IB), anti-GAPDH (clone 14C10, Cell Signaling Technologies, 1:5000 IB), anti-PolD3 (clone 3E2, Abnova, H00010714-M01, 1:1000 IB), anti-Lig4 (clone N2C2, GeneTex, GTX100100, 1:1000 IB), anti-Mre11 (clone 12D7, GeneTex, GTX70212, 1:1000), anti-Rad50 (Cell Signaling Technologies, 3427, 1:1000 IB), anti-HA-tag (Novus biologicals, NB600–363, 1:2000 IB), anti-Lamin A/C (clone E-1, Santa Cruz, sc-376248, 1:200 IF), anti-Lamin B1 (clone C-5, Santa Cruz, sc-365962, 1:200 IF), anti-53BP1 (Thermo Fisher Scientific, PA1–16565, 1:1000 IF), anti-BRCA1 (clone D-9, Santa Cruz, sc-6954, 1:1000 IF).
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10

Oxidative Stress Signaling Pathways

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The 4-hydroxynonenal was obtained from Biomol (Plymouth Meeting, PA, USA). Dulbecco's modified essential medium (DMEM) and fetal bovine serum (FBS) were purchased from GIBCO Invitrogen (Carlsbad, CA, USA). The following antibodies, anti-COX-2, anti-Lamin A/C, and anti-beta actin were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The Pim-2 and myc-tagged antibodies were from Millipore (Billerica, MA, USA). The pp70S6K, p70S6K, p4EBP1, 4EBP1, pBad, Bad, NF-κB (p65), and GAPDH antibodies were from Cell Signaling Technology (Danvers, MA, USA). Other chemicals were of the highest purity available.
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