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8 protocols using goat anti rat igg

1

Immunohistochemical Analysis of Brain Sections

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Brains were sectioned in the coronal plane at 30 μm on a sliding knife microtome with a −25 °C freezing stage. Sections were stored in cryoprotectant at −20 °C until further processing. Visualization of antibody-bound sections for immunohistochemistry (IHC) was performed using biotinylated secondary antibodies, avidin-biotin complex (Elite), and 3,3-diaminobenzadine (DAB) substrate kit (Vector Laboratories). The following primary antibodies were utilized: mouse MHC class II I-Ab (BD Pharmingen, 1:2000); Iba-1 (Wako, 1:5000); ICAM-1 (AbD Serotec, 1:2000); rat anti-CD3 (AbD Serotec, 1:4000); hamster anti-CD3 (Santa Cruz Biotechnology Inc., 1:2000); CD11c (BD Pharmingen, 1:500); and CD11b (Invitrogen, 1:1000). Biotinylated secondary antibodies utilized included goat anti-Armenian hamster IgG (Jackson Laboratories, 1:1000); goat anti-mouse F(ab′)2 (Jackson Laboratories, 1:2000); goat anti-rabbit IgG (Vector Laboratories, 1:1000); and goat anti-rat IgG (Vector Laboratories, 1:2000). Sections used for MHC II, CD11c, CD3, and Iba-1 analysis were counterstained with Methyl Green (Vector Laboratories) according to the manufacturer’s protocol. For immunofluorescence, primary antibodies were utilized at concentrations three times the IHC level. Secondary antibodies bound to Alexa (Invitrogen) or DyLight (Jackson Laboratory) fluorophores were utilized at a dilution of 1:500.
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2

Immunohistochemical Staining Protocol

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D2O was purchased from Cambridge Isotope Laboratories Inc. (Miami, FL). Antirat F4/80 antibody was obtained from AbD Serotech (Raleigh, NC). Antirabbit aSMA antibody was obtained from Abcam (Cambridge, MA). Secondary antibodies goat antirat IgG, goat antirabbit IgG and tertiary antibody antigoat streptavidin horseradish peroxidase (HRP) were purchased from Vector Laboratories (Burlingame, CA)
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3

Microglial Phagocytosis and POMC Neurons

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Animals were sacrificed at 20–21 weeks of age by perfusion fixation (see supplementary methods). Hypothalamic 30 µm thick coronal sections were selected from each mouse covering the rostral–caudal arcuate (ARC) nucleus region. Immunohistochemical staining of the ionized calcium-binding adaptor molecule 1 (Iba1)- and proopiomelanocortin (POMC)-ir were performed to profile, respectively, the microglial morphology and the neighboring POMC neurons; immunofluorescent co-staining of Iba1 and CD68 was performed to examine microglial phagocytic capacity in the ARC region. See supplementary methods for further information on staining protocols.
Primary antibodies: rabbit anti-iba1 (Ref: 234003, Synaptic Systems), rabbit anti-POMC (Ref: H-029-30, Phoenix Pharmaceuticals), rat anti-CD68 (ab53444, Abcam).
Secondary antibodies: goat anti-rabbit IgG biotinylated (Ref: BA-1000, Vector Laboratories), goat anti-rat IgG, biotinylated (Ref: BA-9400, Vector Laboratories). Fluorescent secondary antibodies: Streptavidin, Alexa Fluor 488 (S32354, Invitrogen), goat anti-rabbit IgG, Alexa Fluor 594 (A11037, Invitrogen).
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4

Immunohistochemical Analysis of Vaginal Immune Cells

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The vagina was embedded in OCT and snap frozen in liquid nitrogen
pre-cooled isopentane. Frozen vaginal tissue blocks were cut into sections with
the thickness of 5 μm, stored in −70°C until use.
Cryostat sections were fixed in acetone for 5 min, rehydrated in PBS, and
incubated overnight with primary antibodies including rabbit anti-CD3 (1:100
dilution, AbCam), rat anti-CD8 (1:200 dilution, Biolegend) and hamster
anti-CD11c (1:150 dilution, Biolegend). The primary antibodies were washed out 3
times by PBS followed by the addition of HRP conjugated secondary antibodies
(Vector Lab) including horse anti-rabbit IgG, goat anti-rat IgG and goat
anti-hamster IgG. The secondary antibodies were incubated in room temperature
for 30 minutes followed by DAB (kit from Vector Lab) development and hematoxylin
(BBC Biochemical) counter staining.
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5

Immunohistochemical Analysis of Vaginal Immune Cells

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The vagina was embedded in OCT and snap frozen in liquid nitrogen
pre-cooled isopentane. Frozen vaginal tissue blocks were cut into sections with
the thickness of 5 μm, stored in −70°C until use.
Cryostat sections were fixed in acetone for 5 min, rehydrated in PBS, and
incubated overnight with primary antibodies including rabbit anti-CD3 (1:100
dilution, AbCam), rat anti-CD8 (1:200 dilution, Biolegend) and hamster
anti-CD11c (1:150 dilution, Biolegend). The primary antibodies were washed out 3
times by PBS followed by the addition of HRP conjugated secondary antibodies
(Vector Lab) including horse anti-rabbit IgG, goat anti-rat IgG and goat
anti-hamster IgG. The secondary antibodies were incubated in room temperature
for 30 minutes followed by DAB (kit from Vector Lab) development and hematoxylin
(BBC Biochemical) counter staining.
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6

Immunohistochemical Analysis of Lung Inflammation

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We performed immunohistochemistry on the lung specimens. Paraffin-embedded 5-μm sections either were autoclaved in antigen unmasking solution (Vector Laboratories, Burlingame, CA, USA) or were digested via a protease enzyme. Frozen 8-μm sections were immersed in pre-cooled acetone for 10 min. Endogenous peroxidase was blocked with either 3% H2O2 in PBS or 0.3% H2O2 in methanol. Endogenous avidin and biotin activity were blocked with an Avidin/Biotin Blocking Kit (Vector Laboratories, Burlingame, CA, USA). The sections were incubated first with rabbit anti-mouse IL-17A polyclonal IgG (Santa Cruz Biotechnology, Dallas, TX, USA), rabbit anti-mouse CD3 polyclonal IgG (Abcam Cambridge, UK), rat anti-mouse Ly-6G monoclonal IgG (clone RB6-8C5; eBioscience, San Diego, CA, USA), or rat anti-mouse F4/80 monoclonal IgG (clone CI:A3-1; AbD Serotec, Kidlington, UK). The sections were then incubated with biotinylated secondary antibodies (goat anti-rabbit IgG or goat anti-rat IgG, Vector Laboratories, Burlingame, CA, USA). Following incubation with an ABC kit (Vector Laboratories, Burlingame, CA, USA), DAB (Nichirei, Tokyo, Japan) was added. The tissue sections were counterstained with Mayer’s hematoxylin and mounted with cover slips. Either nonimmune rabbit IgG or rat IgG was applied to the lung sections as a negative control.
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7

Immunohistochemical and Flow Cytometric Analysis of Skin Proteases

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The following primary antibodies were used for IHC: anti-SPINK5 (3 µg/mL; clone HPA009067, Merck, Darmstadt, Germany), anti-Matriptase-ST14 (1:400 dilution, Catalog# AF3946, R&D Systems, Minneapolis, MN, USA) and anti-mouse Kallikrein 5 (1:800 dilution; Catalog# MAB7236, R&D Systems). The following biotinylated secondary antibodies were used: goat anti-mouse IgG, goat anti-rat IgG, rabbit anti-sheep IgG (1:400; Vector Laboratories, Burlingame, CA, USA). The following conjugated primary antibodies were used for flow cytometry: anti-CD45-PeCy7 (clone 30-F11), anti-Ly6G-APC (clone IA8), anti-CD11c-FITC (clone HL3), anti-MHCII-BB700 (clone M5/114.15.2) from BD Bioscience (Franklin Lakes, NJ, USA), and anti-CD64-APC-Cy7 (clone X54-5/7.1) and anti-CD16/CD32 monoclonal antibody (clone 93) from eBioscience (San Diego, CA, USA). The following human recombinant proteases were used: Recombinant Human Matriptase/ST14 Catalytic Domain (Catalog# 3946-SE) and Recombinant Human Kallikrein 5 Protein (Catalog# 1108-SE), from R&D Systems.
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8

Comprehensive Immunohistochemistry and RNAscope Protocol

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Antibodies used for immunohistochemistry and immunofluorescence: rabbit anti-Keratin 10 (1:100, Abcam ab76318), mouse anti-IFITM1 (1:50, Proteintech 60074-1), rat anti-Ki67 (1:200, ThermoFisher scientific 14-5698-82), chicken anti-Keratin 5 (1:100, Biolegend 905901), Rabbit anti-Keratin 8 (1:100, Abcam ab53280), and Biotinylated goat anti-rabbit IgG (1:200, Vector laboratories BA-1000), goat anti-mouse IgG (1:200, Vector laboratories BA-9200) and goat anti-Rat IgG (1:200, Vector laboratories BA-9400), Donkey anti-chicken Alexa Fluor 488 (1:600, Jackson ImmunoResearch 703-545-155), Goat anti-rabbit Alexa Fluor 594 (1:600, Thermo Fisher A-11012) conjugated secondary antibodies. Probes used for RNAscope (Advanced Cell Diagnostics): Krt5 (415041), Avil (C1, 498531), Dsg1a (C2, 842861), Spdef (C2, PN 544421), Muc5b (C2, 471991), Muc1 (C1, 421871), Pigr (C1, 552591), Rbp2 (C3, 444091), Olfm4 (C2, 311831).
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