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5 protocols using cd4 apc clone okt4

1

Detailed PBMC Immunophenotyping Protocol

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1M PBMCs from each donor were stained using standard procedure (30 min, 4 C) with the following surface antibody panel (CD3-PerCP clone SK7 (BioLegend), CD4-APC clone OKT4 (BioLegend), CD8-BV570 clone RPA-T8 (BioLegend), CD14-FITC clone 63D3 (BioLegend), CD19-BV510 clone SJ25C1 (BD), and Ghost dye A710 viability stain (Tonbo)) (Life Sciences Reporting Summary). Samples were then analyzed and sorted using a BD FACSAria Fusion instrument at the UCSF flow cytometry core. To calculate cell type proportions, the number of events in each of CD3+ CD4+ CD8 (CD4+ T cells), CD3+ CD4 CD8+ (CD8+ T cells), CD3 CD19+ (B cells), and CD3 CD14+ (monocytes) were divided by the sum of events in these gates (Supplementary Fig. 21).
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2

T Cell Co-Culture with Immune Cells

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T cell co-culture was performed as previously described (78 (link)) with minor modifications. Briefly, tissue-culture plates were coated with 5 μg/mL purified anti-CD3 (clone HIT3a, Biolegend) at 4°C overnight and subsequently washed twice with 1X PBS. PBMCs from a healthy donor (Research Blood Components) were labelled with CFSE (Invitrogen) following the manufacturer’s protocol. PBMCs were resuspended in SFEM II (StemCell Technologies) with 5 μg/mL purified anti-CD28 (clone CD28.2, BioLegend) and plated at a density of 1M cells/mL. Isolated iMS1 or iMono cells were added at different ratios as indicated. The cells were left in culture for 3–4 days, with media replenished after 2 days. At the end of incubation, the cells were stained with CD3-AF700 (clone OKT3), CD4-APC (clone OKT4), and CD8a-PE (clone RPA-T8) (BioLegend) to determine the amount of CFSE dilution within the T cells.
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3

T Cell Proliferation Assay with iMS1 and iMono

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T cell coculture was performed as previously described (78 (link)) with minor modifications. Briefly, tissue culture plates were coated with purified anti-CD3 (5 μg/ml) (clone HIT3a, BioLegend) at 4°C overnight and subsequently washed twice with 1X PBS. PBMCs from a healthy donor (Research Blood Components) were labeled with carboxyfluorescein diacetate succinimidyl ester (CFSE) (Invitrogen) following the manufacturer’s protocol. PBMCs were resuspended in SFEM II (StemCell Technologies) with purified anti-CD28 (5 μg/ml) (clone CD28.2, BioLegend) and plated at a density of 1 million cells/ml. Isolated iMS1 or iMono cells were added at different ratios as indicated. The cells were left in culture for 3 to 4 days, with media replenished after 2 days. At the end of incubation, the cells were stained with CD3-AF700 (clone OKT3), CD4-APC (clone OKT4), and CD8a-PE (clone RPA-T8) (BioLegend) to determine the amount of CFSE dilution within the T cells.
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4

Detailed PBMC Immunophenotyping Protocol

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1M PBMCs from each donor were stained using standard procedure (30 min, 4 C) with the following surface antibody panel (CD3-PerCP clone SK7 (BioLegend), CD4-APC clone OKT4 (BioLegend), CD8-BV570 clone RPA-T8 (BioLegend), CD14-FITC clone 63D3 (BioLegend), CD19-BV510 clone SJ25C1 (BD), and Ghost dye A710 viability stain (Tonbo)) (Life Sciences Reporting Summary). Samples were then analyzed and sorted using a BD FACSAria Fusion instrument at the UCSF flow cytometry core. To calculate cell type proportions, the number of events in each of CD3+ CD4+ CD8 (CD4+ T cells), CD3+ CD4 CD8+ (CD8+ T cells), CD3 CD19+ (B cells), and CD3 CD14+ (monocytes) were divided by the sum of events in these gates (Supplementary Fig. 21).
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5

MDSC Isolation and Characterization

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Peripheral blood was collected in sterile heparinized tubes from each patient, and PBMC, obtained by Ficoll–Hypaque gradient centrifugation, were analyzed by flow cytometry. The following anti-human fluorescence conjugated antibodies and their corresponding isotype controls used were as follows: anti-human CD11b-APC-cy7 (clone ICRF44, BD), anti-human HLA-DR-PE (clone G46-6, BD), anti-human CD14-FITC (clone 63D3, Biolegend), and anti-human CD66b-Percpcy5.5 (clone G10F5, Biolegend), FVD (BD), CD3-PE-cy7 (clone HIT3a, Biolegend), CD4-APC (clone OKT4, Biolegend), CD8-PB (clone RPA-T8, Biolegend). We used FVD to discriminate dead cells, and MDSC were classified into two subsets, G-MDSC (CD11b+ HLA-DRlow/− CD66b+) and M-MDSC (CD11b+ HLA-DRlow/CD14+). Data were analyzed with FlowJo 10.0 software package (Treestar Inc., Ashland, OR, USA).
For flow cytometric sorting, an Aria II fluorescence activated cell sorter (BD, Mountain View, CA, USA) was used. The strategy for MDSC sorting was CD11b+ HLA-DRlow/− cells from live PBMC. Depletion of MDSC was performed by harvesting the remaining PBMC after MDSC sorting.
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