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Topspin versions 2 1 3 2 and 3

Manufactured by Bruker

Topspin is a software package developed by Bruker for the acquisition, processing, and visualization of nuclear magnetic resonance (NMR) data. Topspin versions 2.1, 3.2, and 3.5 are the latest iterations of this software, providing users with tools for data management, analysis, and reporting. The core function of Topspin is to facilitate the collection, processing, and interpretation of NMR spectroscopic data, enabling researchers and analysts to gain insights into the chemical and structural properties of their samples.

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2 protocols using topspin versions 2 1 3 2 and 3

1

NMR Spectroscopy Data Acquisition and Analysis

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NMR spectra were recorded at 298 K using Bruker Avance III 700 MHz or 800 MHz spectrometers equipped with a triple resonance gradient standard probe or cryoprobe, respectively. Topspin versions 2.1, 3.2 and 3.5 (Bruker BioSpin) were used for data collection. Spectra processing used NMRPipe71 (link) followed by analysis with Sparky 3 (T.D. Goddard and D.G. Kneller, University of California) or CARA (RLJ. Keller, ETH Zurich).
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2

NMR Spectroscopy of FKBP25 Domains

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NMR spectra were recorded at 298 K using a Bruker Avance III 700 MHz or 800 MHz spectrometers equipped with a triple resonance gradient standard probe or cryoprobe, respectively. Topspin versions 2.1, 3.2 and 3.5 (Bruker BioSpin) were used for data collection. Spectra processing used NMRPipe (35 (link)) followed by analysis with Sparky 3 (T.D. Goddard and D.G. Kneller, University of California) or NMRviewJ 8.0 (One Moon Scientific). Spectra for the assignment of backbone 1HN, 1Hα, 13C’, 13Cα, 13Cβ and 15NH nuclei of full-length FKBP25 were collected on a 200 μM 13C,15N-labeled sample in 20 mM sodium phosphate (pH 6.5) with 150 mM NaCl, and 10% D2O added for the lock. NMR spectra include 2D 15N-HSQC, 3D HNCO, 3D HNCACO, 3D HNCA. 3D HNCOCA, 3D CBCACONH, and 3D HNCACB. 1HN and 15NH assignments for the full-length protein were used to assign 15N-HSQC spectra recorded for isolated BTHB and FKBP domains in the same buffer (20 mM sodium phosphate, pH 6.5, with 150 mM NaCl). For the BTHB domain, the assignments were confirmed by measuring additional 3D HNCO and 3D HNCACB spectra on a 310 μM sample of 13C,15N-labeled protein. Assignments of asparagine and glutamine sidechain amides were confirmed by using a 3D 15N-HSQC-NOESY spectrum (150 ms mixing time).
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