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28 protocols using mal 2

1

Lectin Blot Analysis of Rat Brain Glycans

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Lectin blot analyses were conducted using biotinylated peanut agglutinin (PNA, Vector Laboratories, Burlington, ON, Canada), specific to carbohydrate sequence Gal-β (1–3)-GalNAc, and biotinylated Maackia amurensis lectin II (MAL-II, Vector Laboratories), specific for α2–3-linked sialic acid. Twenty-five micrograms of protein from each rat brain homogenate was resolved on an 8% SDS-PAGE gel and transferred to nitrocellulose membranes. Blots were blocked with 3% bovine serum albumin and then incubated overnight at 4 °C with biotinylated lectins (see Table 1 for dilutions used). Subsequently, membranes were incubated with streptavidin-horseradish peroxidase conjugate (1:1000; GE Healthcare Life Sciences, Baie-d’Urfé, QC, Canada). Lectin reactivity was detected by enhanced chemiluminescence (ECL) using the Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific Inc., Rockford, USA). The total intensities of the stained protein bands were quantified by ImageJ software (Rasband, W.S., ImageJ, U.S. National Institutes of Health, Bethesda, Maryland, USA, https://imagej.net/, 1997–2016) and normalized for the combined intensity of protein bands on the same lane stained with Ponceau Red.
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2

Immunostaining of Cell Surface Glycans

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Cells fixed with 4% paraformaldehyde, and permeabilized at room temperature in 0.1% Triton X-100 for 30 minutes. After blocking with blocking buffer (Roche), the cells were incubated with primary antibody overnight at 4°C and with secondary antibody for 2 hours at room temperature. The primary antibodies were used at the following dilutions: anti-ST6Gal1 (ST6Gal1-M2, IBL, 1:50), SNA (Vector Laboratories, 1:100), MALII (Vector Laboratories, 1:100), and ABCG2 (R&D, 1:50). Cells were counter-stained with Hoechst dye (Sigma-Aldrich) to visualize the cell nuclei. Immunostaining images were obtained using a fluorescence microscope (Leica Microsystems Inc).
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3

Lectin Binding Assay for Glycoproteins

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Proteins (50 μg) were subjected to SDS-PAGE in a 10% acrylamide gel, and the resulting bands were transferred onto nitrocellulose membranes. The membrane was blocked by incubation with [0.5% BSA, 0.15 M NaCl, 0.1 mM CaCl2, 0.01 mM MnCl2.4H2O, 0.01 M HEPES.Na+ (pH 7.5)] (HEPES-BSA) overnight at 4 °C, and plant lectin-binding activity was detected by incubating the membrane with HEPES-BSA containing biotinylated ConA, SBA, PNA, SNA, MAL-II, RCA-I, jacalin, UEA-I, DBA, and WGA plant lectins (0.2 μg/ml; Vector Laboratories, Inc., Burlingame, CA, USA) (See Table 2 for binding specificities) for 1 h at room temperature. The membrane was then washed three times, for 15 min each, with HEPES-BSA. Bound biotinylated lectin was detected by incubating the membranes with peroxidase-conjugated streptavidin (0.5 μg/ml) for 30 min at room temperature. The membranes were washed three times, for 15 min each, with HEPES-BSA, and bound peroxidase activity was detected by incubation with 3,3′-diaminobenzidine in the presence of CoCl2 and H2O261 .
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4

Sialic Acid Mimetic Synthesis and Lectin Binding Assay

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The sialic acid mimetic Ac53FaxNeu5Ac was synthesized as described previously [21 (link), 23 (link)]. Carbo‐free blocking solution and biotinylated lectins MALII, SNA‐I, and PNA were purchased from Vector Laboratories, Inc. (Burlingame, CA, USA). Streptavidin‐PE was purchased from BD Pharmingen (Franklin Lakes, NJ, USA), eFluor 780 and 450 viability dyes from eBioscience, Inc. (San Diego, CA, USA), CellTrace™ Violet (PSBE) and CFSE Cell Proliferation Kits from Thermo Fisher Scientific. CpG ODN 1668 (‘5-TCCATGACGTTCCTGATGCT-3’) was purchased from Sigma Genosys (Haverhill, UK), lipopolysaccharide (LPS) (Escherichia coli O111:B4) from Sigma-Aldrich, and murine recombinant interleukin (IL)-2 from Immunotools. For flow cytometry experiments, the following antibodies were used: BioLegend: anti-I-A/I-E-BV510 (M5/114.15.2), anti-H-2 Kb/H-2Db-PE (28–8-6), anti-CD86-APC/Cy7 (GL-1), Anti-CD90.1-APC/Cy7 (OX-7). Antibodychain: anti-CD80-A488 (16-10A1), anti-CD40-PE (23/3), anti-CD11c-APC (N418), anti-CD11b-PerCP (M1/70). eBioscience: anti-CD274-PE/Cy7 (MIH5). BD: anti-CD8a-V450 (53–6.7).
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5

Lectin Binding Analysis in Tumor Tissue

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For analysis of lectin binding by immunofluorescence, frozen sections of optimal cutting temperature compound–embedded tumors were cut and prepared using a cryostat. Biotinylated PNA, MAL II, SNA, and ConA lectins (Vector Laboratories) were used at 10 μg/ml and incubated in FACS buffer for 20 min at 4°C. Binding of lectins for microscopy was then detected by incubation with Streptavidin-Cy3, quantified, and normalized to the respective area of 4′,6-diamindino-2-phenylindole staining. For flow cytometric analysis of lectin binding, single-cell suspensions of tumor digests were blocked, live/dead stained, and incubated with biotinylated lectins at 10 μg/ml. After detection using streptavidin–phycoerythrin (PE)–Cy7, samples were fixed (IC fixation buffer, eBioscience) and acquired on a CytoFLEX flow cytometer (Beckman Coulter). Lectin staining was quantified after doublet and live/dead exclusion using the geometric mean fluorescence intensity. ConA was used as a sialic acid–independent control. A direct staining with PNA-PE (GeneTex) was used to assess desialylation of intratumoral immune cells.
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6

Lectin Staining of Cell Surfaces

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Totally, 2 x 105 cells were stained with 200 µl of 10 µg/ml fluorescein isothiocyanate or biotin-conjugated MAL I, MAL II, SNA, AAL, WGA, and ECL (Vector Laboratories) in lectin staining buffer (PBS, 1% FBS, 0.1 mM CaCl2) for 30 min on ice followed by washing twice with the same buffer. When using biotinylated lectins, additional incubation with streptavidin-FITC (Biolegend) for 20 min on ice was performed. Before the analysis using a FACScanto II flow cytometer (BD Bioscience), cells were washed twice and resuspended in lectin staining buffer.
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7

Neutrophil Activation and Signaling Assay

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SNA, MALII, and protein free blocking solution were purchased from Vector Labs. Polymorphprep was purchased from Axis-Shield. In total, 1 μm FITC-conjugated FluoSpheres (505/515) were purchased from Molecular Probes. N-formyl-L-methionyl-Leucyl-L-phenylalanine (fMLF), polyhydroxyethylmethacrylate, LaB, Cytochrome c from bovine heart, Sia, Gal, 2-DN, and KDO were purchased from Sigma-Aldrich. Both 3’SL and 6’SL were purchased from Cayman Chemical. FITC-conjugated CD11b activation specific monoclonal antibody (CBRM1/5) was purchased from Thermo Fisher Scientific (catalog 14-0113-81). Signaling antibodies for immunoblotting were purchased from Cell Signaling Technologies (total Syk, 2712; Syk Tyr323, 2715; Syk Tyr525/526, 2710; total p38 MAPK, 9212; and p38 MAPK Thr180/Tyr182, catalog 4511). Human TruStain FcX (Fc receptor blocking solution) was purchased from BioLegend. Mouse anti–human FITC–conjugated anti-CD63 (catalog 550759) and anti-CD66b (catalog 561927) mAbs were purchased from BD Bioscience Rat anti–mouse PE-conjugated CD63 (catalog 12063182) and anti-CD15 (catalog MA1-022) mAbs were purchased from Thermo Fisher Scientific.
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8

Mucin TR Reporter ELISA Assay

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ELISA assays were performed using MaxiSorp 96-well plates (Nunc) coated with dilutions of purified mucin TR reporters starting from 100 ng/mL or fractions derived from C4 HPLC incubated o/n at 4 °C in 50 mL carbonate-bicarbonate buffer (pH 9.6). Plates were blocked with PLI-P buffer (PO4, Na/K, 1% Triton-X 100, 1% BSA, pH 7.4) and incubated with mAbs 3C9, 5F4 and TKH2 (undiluted culture supernatants), biotinylated-lectins VVA (0.5 μg/mL), PNA (0.5 μg/mL), MAL II (2.0 μg/mL) (Vector Laboratories) or Pan Lectenz (2.0 μg/mL) (Lectenz Bio) for 1 h at RT, followed by extensive washing with PBS containing 0.05% Tween-20, and incubation with 50 mL of 1 μg/mL HRP conjugated anti-mouse Ig (Dako) or 1 μg/mL streptavidin-conjugated HRP (Dako) for 1 h. Plates were developed with TMB substrate (Dako) and reactions were stopped by the addition of 0.5 M H2SO4 followed by measurement of absorbance at 450 nm.
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9

Lectin-based Cell Surface Glycan Analysis

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Cells were detached using Gibco® versene solution (ThermoFisher, Waltham, MA) and stained with previously conjugated lectins with FITC-conjugated streptavidin (Invitrogen) for 20 min at 4 °C. Cells were strained, labeled with propidium iodide and measured using BD FACSCanto™ II (BD Biosciences, San Jose, CA, USA) Three independent experiments were conducted. Data were analyzed using FlowJo (BD Biosciences, San Jose, CA, USA).4.4. The biotinylated lectins used where MAL-II (Maackia amurensis lectin II), SNA (Sambucus nigra agglutinin), WGA (Wheat germ agglutinin) and AAL (Aleuria aurantia lectin), (all from Vector Laboratories, Burlingame, CA, USA).
An aliquot of each sample was placed on microscopy slides and let dry overnight at RT in dark. Nuclei were stained with DAPI and slides were mounted with VectaShield (Vector Laboratories) and imaged with Zeiss Axio Imager Z1 microscope equipped with an AxioCam MR ver.3.0 (Carl Zeiss, Oberkochen, Germany).
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10

Lectin-Based Glycan Analysis Protocol

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Biotinylated AAL, SNA, MAL-II, WGA, LCA, PSA, PNA, PHA-L, and GSL-1 lectins and 10x Carbo-free Blocking Buffer were purchased from Vector laboratories Inc. Biotinylated AOL lectin was purchased from TCI Europe. 0.2 mg/mL Streptavidin-phycoerythrin conjugate was purchased from Fischer Scientific (Invitrogen, eBioscience). Unnatural sugar derivatives were synthesized as described under synthetic procedures and stored at −20 °C at a concentration of 100 mM in DMSO.
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