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13 protocols using perm buffer 2

1

Quantifying BTK Expression in Monocytes

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The expression of BTK in monocytes was evaluated by immunostaining from whole blood as previously described (7 (link), 8 (link)). In brief, the red blood cells were removed using Lyse/Fix Buffer (BD Pharmingen, San Diego, CA), then incubated with CD14–PE (clone Mϕ, BD Pharmingen) for 20 min, permeabilized using Perm Buffer II (BD Pharmingen), and then stained with AlexaFluor647-conjugated anti-BTK Ab (clone53/BTK, BD Pharmingen) or isotype IgG2a (clone MOPC-173, BD Pharmingen) to identify epitopes between 2 and 172 amino acids of the Pleckstrin homology (PH) and Tec homology (TH) domains within the gating monocytes. The threshold of FSC was set as 5,000 and the data was analyzed by FlowJo 7.6 (Treestar, USA).
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2

Intracellular Phospho-SYK Profiling of Stimulated PBMCs

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PBMCs were rested for 30 min in RPMI at 37°C after isolation and stimulated with 19.5 µg/ml aBCR F(ab)2 IgM/IgA/IgG or RPMI for 5 min. Cells were then lysed/fixed (BD Lyse/Fix Buffer, BD Biosciences) and subsequently permeabilized with Perm Buffer II (BD Biosciences) according to the manufacturer’s instructions. Intracellular staining of pSYK Y352 and markers to identify respective subsets was carried out for 1 h at room temperature and cells were acquired on a BD LSR Fortessa X-20.
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3

Cytometric Analysis of T Cell Subsets

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Stimulated T cells and IL-12 receptor-specific siRNA-transfected T cells were stained with anti-mouse CD4-peridinin-chlorophyll protein and anti-mouse CD25-allophycocyanin for 30 min at 4 °C. The cells were permeabilized and fixed with CytoPerm/CytoFix (BD Biosciences, San Diego, CA, USA) in accordance with the manufacturer’s protocol; further stained with anti-mouse Foxp3-phycoerythrin (PE) and/or anti-mouse IL-17-fluorescein isothiocyanate (FITC), anti-mouse IFN-γ-PE, and anti-mouse IL-4-PE (all from eBioscience, San Diego, CA, USA); and subjected to flow cytometric analysis (FACSCalibur; BD Biosciences). For p-STAT3 Y705 and S727 and p-STAT5 analysis, splenocytes were treated with p40-EBI3 (1 and 10 μg/mL) and IL-6 for 1 h; the cells were then stained with anti-mouse CD4-FITC. The cells were fixed and permeabilized with Lyse/Fix Buffer (BD Pharmingen, San Jose, CA, USA) and Perm Buffer II (BD Pharmingen). The permeabilized cells were stained with anti-p-STAT3 Y705-PE, anti-p-STAT3-S727-PE, or anti-p-STAT5-PE (BD Pharmingen) and subjected to flow cytometric analysis (CytoFLEX; Beckman Coulter, Fullerton, CA, USA).
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4

Cytokine-Induced Stat Phosphorylation in hPBMCs

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hPBMCs (3 × 106 cells/tube) were incubated with a test compound for 30 min at 37 °C, and then treated with IL-2 (100 ng/mL), IL-6 (100 ng/mL), IL-23 (100 ng/mL), IFN-α (100 ng/mL), or GM-CSF (1 ng/mL) for an additional 15 min. To terminate the stimulation, the cells were fixed with Fixation Buffer (BD Biosciences) for 10 min at 37 °C. The fixed cells were incubated with Perm Buffer II (BD Biosciences) for 30 min on ice and then incubated with fluorochrome-labeled anti-CD3, anti-CD4, or anti-phospho-Stat antibodies for 30 min at room temperature. The cytokine-induced Stat phosphorylation was analyzed and quantified using a Cytomics FC500 (Beckman Coulter Inc., Brea, CA). In the case of IL-23 stimulation, hPBMCs were precultured with 10 μg/mL phytohemagglutinin (PHA)-M (Sigma-Aldrich Co.) for 3 days to enhance their response to IL-23.
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5

Cell Lysis and Intracellular Staining

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Filtered cell suspension was lysed with prewarmed 1× Lyse/Fix buffer (BD Biosciences). After centrifugation and washing with ice-cold PBS, cells were permeabilized with Perm Buffer II (BD Biosciences) according to the manufacturer’s protocol and as described previously (16 (link)). Subsequently, the cells were washed with PBE and stained intracellularly.
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6

Naive T-Cell Activation and pSTAT5 Analysis

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Naíve (CD4+CD25CD44lowCD62Lhigh) cells were sorted, and activated with plate-bound anti-CD3 and anti-CD28 (1 μg/well) for 48 h. The cells were then washed and exogenous IL-2 (100, 10 and 1 U/ml) was added to the cells for 15 minutes. The cells were immediately fixed with Cytofix/Cytoperm buffer (BD). After incubation for 12 minutes, the cells were washed, resuspended in 1ml Perm Buffer II (BD), and incubated on ice for 30 minutes. After an additional wash, cells were stained with pSTAT5 (pY694; Cell Signaling Technology).
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7

Intracellular Cytokine Staining by Flow Cytometry

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Flow cytometry was performed on a FACS Canto II (BD Bioscience, San Jose, CA) and data were analyzed using FlowJo Software (Tree Star, Ashland, OR). Cell number was counted using flow cytometry unless otherwise indicated. For intracellular cytokine staining, cells were fixed with Fixation Buffer (BD Bioscience) for 30 min and permeabilized with Perm Buffer II (BD Bioscience) for 30 min. Then, samples were stained with antibodies for pY701-STAT1 and pY705-STAT3.
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8

B Cell Receptor Stimulation Assay

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For B cell receptor (BCR) stimulation, 2x106 MNCs were equilibrated with RPMI 1640 at 37°C for 30 minutes and stimulated with 30 μg/ml anti-IgM/IgG/IgA (Jackson ImmunoResearch, Ely, UK) for 5 min. To assess baseline phosphorylation, cells were treated with RPMI for 5 min (control). After stimulation, cells were lysed with Lyse/Fix Buffer (BD Biosciences), permeabilized with Perm Buffer II (BD Biosciences) according to the manufacturer’s protocol, washed with PBS/BSA/EDTA and stained intracellularly.
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9

Whole Blood Cytokine Signaling Assay

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Fresh whole blood (lithium heparin) was incubated with 10 µg/mL polymyxine B (Sigma-Aldrich), CD45-V500 (BD biosciences), and CD14-FITC (BD biosciences) in the absence or presence of 75 ng/mL IL-1b (eBioscience), 1 µg/ml Pam3CKS4 (In vivogen), 3 µg/mL R848 (In vivogen), or 20 ng/mL TNF-a (Peprotech). Cells were incubated for 15 min at 37°C, 5% CO2. Thereafter, the RBCs were lysed, fixed [with Lyse/Fix Buffer (BD biosciences) for 10 minutes at 37°C, 5% CO2], permeabilized (Perm Buffer II, BD biosciences) for 30 minutes on ice, washed with Stain buffer (BD biosciences) and incubated with 1:20 diluted PE Mouse anti-IkBa (BD biosciences).
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10

Ex Vivo Phosphorylated STAT5 Quantification

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To assess phosphor (p) STAT5 levels directly ex vivo, spleens were immediately disrupted and fixed with Cytofix/Cytoperm buffer (BD). After incubation for 12 min in a 37°C incubator with 5% CO2, the cells were washed, resuspended in 1ml Perm Buffer II (BD), and incubated on ice for 30 min. After an additional wash, cells were stained for surface and intracellular antigens, including pSTAT5 (pY694; Cell Signaling Technology) or pSTAT1 (pY701; CST), for 45 min on ice. In some experiments, cells were stimulated with different concentrations of mouse IFNβ (PBL Interferon Source) and mouse IFNα2 (eBioscience) for 15 min.
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