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57 protocols using red cell lysis buffer

1

Isolation and Characterization of Liver Immune Cells

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Single cell preparations from the liver were generated by a combination of mechanical disruption (GentleMACS, Miltenyi Biotec, Bisley, UK) and enzymatic digestion (2 mg/ml Collagenase D, Roche). These were then passed through a 70 μm filter and centrifuged at 50g for 5 min to remove debris and hepatocytes. Red cells were lysed (Red Cell Lysis Buffer, Sigma-Aldrich, Poole, UK). Immune cells were isolated by positive selection using a CD45 + MicroBead AutoMACS separation (Miltenyi Biotec, Bisley, UK) and then stained with a fixable Live-Dead marker (Life Technologies, Paisley, UK) and a multi-colour panel of antibodies, including CD3, CD4, CD8, CD19 and NK1.1 (Biolegend, San Diego, USA). NKT cells were also identified using PBS-57 tetramers, an analogue of alpha-galactosylceramide developed by Dr. Paul Savage (The NIH Tetramer Facility, Emory University, Atlanta, USA) and complexed to CD1d tetramers [42] (link).
Samples were then run on a BD LSR II Fortessa (BD Biosciences, Oxford, UK) and analysed with FlowJo software (Tree Star, Ashland, USA). T cells were defined as CD3 + CD19 − cells and NKT cells as CD3intNK1.1 + (or CD3 + Tetramer +) cells, within a forward-side scatter defined lymphocyte gate (Supplemental Fig. 1).
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2

Splenocyte Isolation and Counting

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Splenocyte suspensions were obtained using a glass homogeniser (Fisher) with RPMI containing 10% FBS, 100 IU/ml penicillin and 0.1 mg/ml streptomycin (Gibco). Cells were treated with red cell lysis buffer as directed (Sigma-Aldrich). Live cells were counted using Trypan blue exclusion.
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3

Isolation of Murine Whole Blood and Splenocytes

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Blood was collected by cardiac puncture after euthanasia and directly mixed with 5 ml PBS without Ca2+/Mg2+ supplemented with 4 mM EDTA to prevent clotting. An equal volume of dextran-T-500 was added, the solution gently mixed by inversion, and incubated at 37°C for 45 min. The supernatant was collected and centrifuged and incubated with 2 ml red blood cell lysis buffer (Sigma, St. Louis, MO, USA). The pelleted white blood cells were then stained and analyzed by flow cytometry. Spleens were collected, and crushed over a 40 um cell strainer with 10 ml of cold PBS. After centrifugation, the supernatant was discarded and red blood cells were lysed using a red cell lysis buffer (Sigma, St. Louis, MO, USA). The leukocytes were used for flow cytometry.
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4

Measuring EBOV-specific CD8+ T cell responses

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Mice were sacrificed eight days post prime or prime-boost immunizations. A cell suspension was prepared by homogenizing the spleens through 200 µm mesh sieves and red blood cells were removed by adding Red Cell lysis buffer (Sigma, St. Louis, MO, USA). After centrifugation, the cell pellet was resolved in RPMI medium supplemented with 10% FCS, 2 mM L-glutamine and 100 IU/mL penicillin/streptomycin. Interferon-γ secreting CD8+ T cells were analyzed by ELISPOT assay (ELISPOTPLUS Kit for mouse IFN-γ, MABTECH, Eching, Germany) following the manufacturer’s instructions. ELISPOT plates were pre-incubated overnight with the antibody solution and then incubated with the cell suspension that had been stimulated with the EBOV-specific peptides NP44–52 (YQVNNLEEI; [45 (link)]) and NP388–396 (FQQTNAMVT; [45 (link)]). The spots were counted and analyzed by using an automated ELISPOT plate reader and software following the manufacturer’s instructions (A.EL.VIS Eli.Scan, A.EL.VIS ELISPOT Analysis Software, Hannover, Germany).
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5

Isolation of Splenic and Lymphoid Lymphocytes

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Lymphocytes from spleens (SPL), mesenteric lymph nodes (MLN), and Payer’s patches (PP) were isolated according to standard protocols used in our laboratory [24 (link)]. Briefly, tissues were homogenized in RPMI 1640 medium supplemented with 10 mM HEPES and 10 units/mL penicillin-streptomycin solution (incomplete medium), and the resulting cell suspension was filtered through an 80-μm nylon filter. The splenocytes were incubated with red cell lysis buffer (Sigma) for 5 min to remove erythrocytes. The lymphocytes were washed with incomplete medium and centrifuged at 400× g at 10 °C for 10 min. The pelleted cells were resuspended in 1 mL of incomplete medium. After trypan blue (Sigma) staining, lymphocytes were counted using a Bruker cell counter.
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6

Immune Cell Isolation and Culture

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Lymphoid tissue was dissociated using standard protocols and red blood cells removed using Red Cell Lysis buffer (Sigma). Unless otherwise stated, cells were cultured in complete RPMI 1640 (Lonza; supplemented with 25 mM HEPES, 50 U/ml Pen/Strep, 2 mM L-Glutamine and 50 µM 2-mercaptoethanol) with 5–10% FCS (BioSera, Hyclone). PL8 and CH27 cells were maintained in complete RPMI with 10% FCS. Th17 cells were generated and maintained in IMDM (Lonza; supplemented with 50 U/ml Pen/Strep, 2 mM L-Glutamine and 50 µM 2-mercaptoethanol) containing 10% FCS.
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7

Isolation and Differentiation of Human Macrophages

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Peripheral blood mononuclear cells (PBMCs) from healthy anonymous donors were isolated from leukocyte provided by the National Blood and Transplant Service, UK. Red blood cells were removed by centrifugation on Ficoll-Paque (28-4039-56 AD; GE Healthcare) and red cell lysis buffer (11814389001; Sigma-Aldrich). Recovered PBMCs were washed to remove platelets. Monocytes were isolated from PBMCs using a magnetic cell separation system with anti-CD14 mAb-coated microbeads (130-050-201; Miltenyi Biotec). CD14-positive monocytes were cultured in complete RPMI 1640 medium (Lonza) supplemented with 9.1% heat-inactivated FCS supplemented with either 50 ng/ml GM-CSF or 50 ng/ml M-CSF (130-093-862/130-093-963; Miltenyi Biotec) at 37°C under a humidified 5% CO2 atmosphere for 6 d. Media were replaced at 3 d. On day 6, the cells were washed and detached with 0.5 mM EDTA in ice-cold PBS and plated in a 24-well plate (containing coverslips for microscopy) or a live-cell imaging dish at a concentration of 2 × 105 cells/well with complete RPMI media (for resting macrophages). Macrophages were either treated overnight or after infection with recombinant human IFN-γ (PHC 4031; Gibco) at a concentration of 100 U/ml.
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8

Adipose Tissue Cell Viability Assay

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A volume of 6 mL of processed adipose tissue was transferred into 2-mL aliquots (3 PWAS samples and 3 RLDS samples from each patient). Red Cell Lysis Buffer, 8 mL, was added (Sigma-Aldrich R7757, St. Louis, MO, USA) to each conical tube, and the tubes were placed on a rocker in a 37°C incubator for 3 minutes. The tubes were centrifuged at 1,200g for 3 minutes and 1 g of fat was transferred into a 15-mL conical tube for each sample. Collagenase, 1 mL (Sigma-Aldrich C6885), was added to 1 g of fat and placed on a rocker in 37°C incubator. After 30 minutes, 1 mL of the cell suspension was transferred to a new conical tube. The cell suspension, 50 µL, was transferred to an Eppendorf tube with equal parts of 0.4% trypan blue dye, thoroughly mixed, loaded into a hemocytometer and examined under a microscope. The number of dead (stained) and live cells (unstained) was manually counted, and viability was calculated using the following formula: % viable cells = (number of unstained cells ÷ number of total cells) × 100.
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9

Isolation of Murine Lymphocyte Subsets

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Lymphocytes were isolated according to our previous method (22 (link)). Briefly, the liver and lungs were perfused and digested with 0.05% collagenase IV (Roche, Indianapolis, IN) at 37°C for 30 min. Cell suspensions were passed through a 70-μm nylon cell strainer to yield single-cell suspensions. Lymphocytes were enriched by centrifugation (400 g) at room temperature for 30 min over a 30/70% discontinuous Percoll gradient (Sigma, St. Louis, MO). Spleen and lymph nodes were removed from mice and gently meshed in the RPMI-1640 medium through a cell strainer. Red blood cells were removed by using Red Cell Lysis Buffer (Sigma, St. Louis, MO). Naïve CD4+ and CD8 T+ cells were isolated from spleens of naïve mice and purified using Naïve CD4+ and CD8+ T cell isolation kits respectively, based on the CD44 phenotype (Miltenyi Biotec, Auburn, CA). The purities of the target cells were higher than 95%.
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10

Splenocyte Isolation and Counting

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Splenocyte suspensions were obtained using a glass homogeniser (Fisher) with RPMI containing 10% FBS, 100 IU/ml penicillin and 0.1 mg/ml streptomycin (Gibco). Cells were treated with red cell lysis buffer as directed (Sigma-Aldrich). Live cells were counted using Trypan blue exclusion.
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