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15 protocols using gdf11

1

Assessing Erythroid Differentiation in Hematopoietic Cells

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Human BM CD34+ cells from healthy donors were plated in Methocult media to assess BFU-E and CFU-E growth (Supporting information) (Lopez-Holgado et al, 2005 (link)). Human CD36+ cells were cultured in liquid media to evaluate RAP-011 effects on erythroid differentiation (Figure S2). In some experiments, Activin A, Activin B and GDF11 (R&D Systems) were added to the cultures with each fresh addition of media, at concentrations of 30 ng/ml for Activins or 50 ng/ml for GDF11.
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2

Investigating Cell Proliferation and Morphology in Kidney Cell Lines

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NRK49f, NRK52e, HK-2, and IMCD-3 cell lines were purchased from ATCC (Mannassas, VA). For proliferation studies, NRK49f cells were seeded in 96-well plates in media containing recombinant GDF11 or TGF-β (R & D Systems) and incubated for 5 d. A MTT assay was used to measure cell viability. For bright-field morphological analysis and preparation of Western blot and PCR extracts, cells were grown in plastic dishes. For αSMA immunohistochemistry and immunofluorescence of SMAD2, E-cadherin, vimentin and αSMA, cells were grown in chamber slides (Nalge Nunc). For immunofluorescence, cells were visualized on a Zeiss LSM510/UV confocal microscope. Inhibitors were added simultaneously with 50 ng/mL GDF11 as follows: 50 ng/mL follistatin (R&D Systems), 500 ng/mL SB-431542 (Sigma), and 10 µM SIS3 (Calbiochem–EMD Millipore, Darmstadt, Germany).
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3

Receptor-Ligand Binding Kinetics by SPR

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Receptor-ligand binding affinities were determined by surface plasmon resonance (SPR), as previously described10 (link) with slight modifications: we used HBS-EP (+) buffer as running buffer, an anti-human Fc IgG capture kit for capturing BMPRIA-Fc and BMPRIB-Fc, and the ligands were injected at 25 °C at a flow rate of 30 μL/min. We used a single-cycle kinetics assay to determine the binding affinities of BMPRIA-Fc and BMPRIB-Fc, and association and dissociation phase data were analyzed by kinetics using a 1:1 binding model in Biacore T100 Evaluation Software (GE Healthcare). Kinetic constants were calculated as the average of 2 or 3 independent analyses of receptor-ligand interactions. BMPRIA-Fc, and human BMP2, BMP4, BMP6, BMP7, BMP9, BMP10, BMP15, Activin A, and GDF11, and mouse GDF-5, GDF-6, and GDF-7 were purchased from R&D Systems. Human GDF9 was purchased from Biovision.
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4

GDF11 Signaling Pathways in PC12 Cells

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PC12 cells were purchased from zqxzbio (Shanghai, China) and cultured with complete medium (DMEM supplemented with 5% (v/v), fetal bovine serum (FBS; Procell Life Science & Technology Co., Ltd., Wuhan, China), 10% (v/v) horse serum (HS; Biological Industries, Israel), 100 U/mL penicillin and 100 µg/mL streptomycin) at 37 °C, and 5% CO2 in a humidified atmosphere. After reaching approximately 80% confluence, PC12 cells were trypsinized and sub-cultured. For following experiments, the medium was changed to starved medium (DMEM supplemented with 0.5% FBS, 1% HS, 100 U/mL penicillin and 100 µg/mL streptomycin) after cultivation overnight. After 6 h of starvation, different concentrations of GDF11 (12.5, 25, 50 and 100 ng/mL; R & D systems, Minneapolis, MN, USA) were added, respectively. For signal pathway inhibition, after 6 h starvation, PC12 cells were pretreated with ALK5 inhibitor SB431542 (Beyotime Biotechnology, Shanghai, China) or PI3K inhibitor LY294002 (Beyotime Biotechnology, China) for 4 h before GDF11 was added for a further 5–72 h.
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5

Cell Proliferation Assay with Growth Factors

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Briefly, cells were seeded in 96-well cell culture plate at a density of 1×10 4 cells per well, then incubated for 24 hours. Then the medium was removed and the cells were treated with new FBS free medium followed by the addition of CCK-8 solution (Dojindo Laboratories, Mashikimachi, kamimashiki gun Kumamoto, Japan). After 2 hours, the BioTEK (Winooski, VT) was used to record the absorbance at 450 nm. In some experiments, the cytokines/growth factors were added into the OC culture medium for 24 hours with different doses. The factors are IGF-1 (R&D Systems, Minneapolis, USA, 791-MG-050), GH (ProSpec, Rehovot, Israel, CYT-540), Wnt3a (R&D Systems, Minneapolis, USA, 1324-WN-010), TGF-β1 (R&D Systems, Minneapolis, USA, 7666-MB-005) and GDF11(R&D Systems, Minneapolis, USA, 1958-GD-010).
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6

GDF11 Administration Post-Irradiation

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GDF11 (R&D Systems) was dissolved in 4 mM sterile HCl with 0.1% BSA. At 24 h postirradiation, mice received 5 daily intraperitoneal (i.p.) injections of GDF11 or solvent only. GDF11 doses are indicated in the individual experiments. To assess toxicity the mice were weighed daily.
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7

Serum Biomarker Analysis by ELISA

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Blood draws were performed via venipuncture by a trained phlebotomist. Following a 10-h fast, all subjects submitted a blood sample for analysis in the morning to control for diurnal variations. Blood was drawn from the antecubital vein into dry serum tubes (Vacutainer, Becton, Dickinson and Company, Franklin Lakes, NJ). Upon clotting, blood was centrifuged and serum was collected for analysis. Serum was centrifuged at 5000 g for 5 min to pellet debris. Irisin (Biovision, Milpitas, CA); myonectin (Aviscera Bioscience Santa Clara, CA); GDF-11 (San Diego, CA); cortisol (Spring Valley, CA); FGF-21, IL-6, IL-15, and CRP (R & D Systems, Minneapolis, MN) were measured using quantitative sandwich ELISA kits, following the instructions provided for each kit. Final reactions were measured using a spectrophotometer (Molecular Devices, Sunnyvale, CA) at 450 nm optical density and final concentration of the samples was calculated using SoftMax Pro 5.4 (Molecular Devices, Sunnyvale, CA) via standard curves for reference.
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8

Protein Expression and Signaling Pathway Analysis

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Cell lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer (Beyotime, China, P0013B). Total protein was quantified by BCA protein assay (Bio-Rad, Berkery). Each sample was adjusted to equal amount of protein using 5× loading buffer for loading. The samples were separated by SDS-PAGE, transferred to a polyvinylidene fluoride membrane and immunoblotted with the following antibodies: GDF11(19581,R&D Systems, Emeryville, CA, USA), VEGF (ab46154, Abcam, USA), HGF (ab83760, Abcam, USA), phospho-AKT (#4060, Ser473, Cell Signaling Technology), AKT (#4685, following Abs are all from Cell Signaling Technology), Phospho-PI3 Kinase (p85 (Tyr458)/p55 (Tyr199), #4228), PI3K (#4257), BCL2 (#2827), BAX (#14796), Cleaved Caspase3 (#9661), anti-β-actin (#3700), Cleaved Caspase3 (#9661), at 4 °C overnight. After incubation of the membranes with peroxidase-conjugated secondary antibodies (Cell Signaling Technology), bands were visualized using enhanced chemiluminescence reagents (Bio-Rad, USA).
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9

Purification of TGF-β Family Proteins

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Human nodal (Q96S42), BMP7 (P18075), BMP15 (O95972), BMP8b (P34820), and GDF11 (O95390) were obtained from R&D Systems or PeproTech. Activin A (P08476), activin B (Q53T31), and BMP10 (O95393) were produced in-house using stably transfected CHO cells. Activin A was captured from CM by Protein A affinity chromatography. BMP10 was captured from CM by Metal affinity chromatography (Excel, Cytiva). Both GF moieties were separated from the prodomain using Reversed Phase Chromatography (Resource RPC, Cytiva). Activin B was purified as described (50 (link)). GFs were lyophilized and stored at −80 °C. NCBI-protein accession numbers are shown in parentheses.
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10

Antibody Profile for Cell Signaling Study

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All antibodies used in this study are summarized in Table 1. The recombinant human GDF-11 and BMP-4 were obtained from R&D systems. The SB431542 was obtained from Sigma. GDF-11 and BMP-4 were solubilized in phosphate-buffered saline (PBS). SB431542 was dissolved in dimethyl sulfoxide (DMSO).

The information of antibodies

Name of antibodyManufacturer and catalog #Molecular weightDilution used
CGBProteintech (11615–1-AP)18 kDa3000x
Phospho-SMAD1/5/8Cell Signaling Technology (13820)60 kDa1000x
Phospho-SMAD2Cell Signaling Technology (3108)60 kDa1000x
Phospho-SMAD3Cell Signaling Technology (9520)52 kDa1000x
SMAD1Cell Signaling Technology (6944)60 kDa1000x
SMAD2Cell Signaling Technology (3103)60 kDa1000x
SMAD3Cell Signaling Technology (9523)52 kDa1000x
SMAD4Cell Signaling Technology (38454)70 kDa1000x
α-TubulinSanta Cruz (sc-23948)55 kDa5000x
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