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8 protocols using anti ash2l

1

Epigenetic Markers Immunostaining Protocol

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Immuno-FISH was performed as described [28 (link),67 (link)]. Antibodies used in this study are the following: anti-H3K27me3 (#0323, MABI [1:1000 dilution] and #9733, Cell Signaling [1:1000]), anti-uH2A (#8240, Cell Signaling [1:1000]), anti-H4K20me1 (#39727, Active motif [1:5000]), anti-RBBP5 (A300-109A, Bethyl Laboratories [1:400]), anti-ASH2L (A300-107A, Bethyl Laboratories [1:400]), anti-EZH2 (#612666, BD [1:200]), anti-RING1B (#5694, Cell Signaling [1:50]) and anti-FLAG-M2 (F1804, SIGMA [1:4000]).
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2

Chromatin Immunoprecipitation (ChIP) Assay

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Antibodies used included anti-Flag (Sigma, F3165-5MG, clone M2), anti-MLL1C (Bethyl, A300-374A), anti-RbBP5 (Bethyl, A300-109A), anti-ASH2L (Bethyl, A300-112A), anti-WDR5 (Bethyl, A302-430A), anti-GFP (Clontech, 632377, clone JL-8), anti-trimethyl-Histone H3 (Lys4) (EMD Millipore, 07-473), anti-LANA LN53 (Millipore, MABE1109), goat anti-rat IgG (H + L) Alexa Fluor 488 (Invitrogen A11006), goat anti-rabbit IgG (H + L) Alexa Fluor 647 (Invitrogen A21245), human anti -LANA sera adsorbed against uninfected cell extract for western blot or affinity purified against carboxy-terminal LANA for ChIP, Anti-T7 tag® antibody (Abcam, ab9138), and anti-alpha-tubulin (Sigma T9026, cline DM1A).
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3

Comprehensive Western Blotting and Cell Cycle Analysis

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Western blotting was performed as described previously 8 (link), 61 (link), with the exception that Alexa Fluor secondary antibodies were used. All blots were developed using the Odyssey fluorescence image scanner and the band intensities were quantified using LI–COR software. Cell cycle analysis was performed using PI (propidium iodide) staining as described previously 8 (link), using the CycleTEST PLUS DNA reagent kit (BD Biosciences, San Jose, CA, USA; # 340242). The following antibodies were used in the study: anti–P53 (SCBT; sc–6243), anti–P21 (BD; #556431), anti–APAF1 (R & D; #MAB828), anti–PIG3 (abcam; #ab64798), anti–PUMA (CST; #4976); anti–Ash2L (Bethyl Labs; #A300-108A), anti–H3K4me3 (abcam; #ab1012), anti–Wdr5 (abcam; #ab56919); anti–RbBP5 (Bethyl Labs; #A300-109A), anti–RNAP II (SCBT; sc–899); anti–Serine5–CTD (abcam; #ab5131–50); anti–TAFII (SCBT; sc–735); anti–TFIIB (SCBT; sc–225); anti–TFIIF (SCBT; sc–235); anti–Tubulin (Sigma; #T5168), Alexa Fluor 680 goat anti–mouse IgG (Molecular Probes; #A21057) and Alexa Fluor goat anti–rabbit IgG (Molecular Probes; #A21076).
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4

Antibody Validation for Protein Interactions

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Antibodies are as follows: anti-HA (Abcam, ab9110), anti-AKAP95 (Santa Cruz Biotechnology, sc-10766), anti-His (Santa Cruz Biotechnology, sc-803), anti-GAPDH (Chemicon, MAB374), anti-FLAG (Sigma, A8592, for blotting), anti-FLAG [M2 beads] (Sigma, A2220), and anti-H3K4me3 (Millipore, 07–473), anti-RBBP5 (Bethyl Laboratories, A300–109A), anti-ASH2L (Bethyl Laboratories, A300–107A), anti-WDR5 (Bethyl Laboratories, A302–430A).
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5

Chromatin Immunoprecipitation (ChIP) Assay

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Chromatin immunoprecipitation (ChIP) assays were performed as described previously (18 (link)). Rabbit polyclonal antibodies for ChIP were either custom generated for EBNA1 (Pocono Rabbit Farm) or were purchased for rabbit and mouse anti-IgG (Santa Cruz Biotechnology), anti-HCF1 (catalog no. A301-400A; Bethyl), anti-RbBp5 (catalog no. A300-109A; Bethyl), anti-Ash2L (catalog no. A300-489A; Bethyl), anti-OCT2 (catalog no RB9297; Neo Markers) and pan-H3 (catalog no. 07-690), H3K4me3 (catalog no. 07-473), H3K9acetyl (catalog no. 07-352) were purchased from Millipore. Rabbit serum anti-H3K9me3 (catalog no. 39161), anti-H3K4me1 (catalog no. 61633), anti-H3K27me3 (catalog no. 39155)- and anti-H3K27acetyl (catalog no. 39685), and anti-H3K4me2 (catalog no. 39141) were from Active Motif.
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6

Comprehensive Western Blotting and Cell Cycle Analysis

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Western blotting was performed as described previously 8 (link), 61 (link), with the exception that Alexa Fluor secondary antibodies were used. All blots were developed using the Odyssey fluorescence image scanner and the band intensities were quantified using LI–COR software. Cell cycle analysis was performed using PI (propidium iodide) staining as described previously 8 (link), using the CycleTEST PLUS DNA reagent kit (BD Biosciences, San Jose, CA, USA; # 340242). The following antibodies were used in the study: anti–P53 (SCBT; sc–6243), anti–P21 (BD; #556431), anti–APAF1 (R & D; #MAB828), anti–PIG3 (abcam; #ab64798), anti–PUMA (CST; #4976); anti–Ash2L (Bethyl Labs; #A300-108A), anti–H3K4me3 (abcam; #ab1012), anti–Wdr5 (abcam; #ab56919); anti–RbBP5 (Bethyl Labs; #A300-109A), anti–RNAP II (SCBT; sc–899); anti–Serine5–CTD (abcam; #ab5131–50); anti–TAFII (SCBT; sc–735); anti–TFIIB (SCBT; sc–225); anti–TFIIF (SCBT; sc–235); anti–Tubulin (Sigma; #T5168), Alexa Fluor 680 goat anti–mouse IgG (Molecular Probes; #A21057) and Alexa Fluor goat anti–rabbit IgG (Molecular Probes; #A21076).
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7

Protein Interaction and Transcriptional Regulation Assays

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All plasmids about BAP18 were introduced in our previous work (39 (link)). ERα expression plasmid was cloned into pSG5 plasmid and 3 estrogen response elements were cloned made into pGL-ERE-adML reporter plasmid to perform luciferase reporter assay.
The antibodies were used in our study as follow: anti-BAP18 (Bethyl #A304-207A-1), anti-ERα (Cell signaling #D8H8), anti-MYC (Thermo Fisher #9E10), anti-CyclinD1 (Cell signaling #DCS6), anti-GAPDH (Kangchen #KC5G4), anti-WDR5 (Bethyl #A302-429A-2), anti-ASH2L (Bethyl #A300-107A-2), anti-DPY30 (Abcam #ab187690), anti-H3K4me3/H3ac/H3K9ac/H4ac/H4K16ac (Millipore), anti-Rabbit/Mouse (ABclonal), anti-IgG (Proteintech#10238-1-AP), anti-GFP (Sigma #G1544) and anti-FLAG (Proteintech#20543-1-AP).
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8

Immuno-FISH Protocol for Histone Modifications

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Immuno-FISH was performed as described (21 (link),35 (link)). Antibodies used in this study are: anti-H3K27me3 (MABI #0323, 1:1000 dilution and Cell Signaling #9733, 1:1000), anti-H2AK119Ub (Cell Signaling #8240, 1:1000), anti-H4K20me1 (Active motif #39727, 1:5000), anti-ASH2L (Bethyl Laboratories A300-107A, 1:400).
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