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7 protocols using ifn γ

1

Isolation and Activation of Peritoneal Macrophages

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Peritoneal Mφ were elicited with Bio-Gel P100 and harvested as previously described (60 ). Cells were seeded into 6-well tissue culture plates, 2.5 × 106 cells per well, with some activated by priming with 10 ng/ml interferon-γ (IFN-γ) (Novus Biologicals, Littleton, CO) for 6 hours followed by addition of 100 ng/ml LPS or 50 μg/ml PIC (LIγ=IFN-γ + LPS; PIγ=IFN-γ + PIC). Cells were harvested 48 to 96 hours later by first vacuuming off any non-adherent cells (including any residual, non-apoptosed B1 lymphocytes) and then detaching adherent Mφ by incubating in 6 mM ethylenediaminetetraacetic acid (EDTA) in phosphate buffered saline (PBS) at 37° C for 10 minutes.
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2

Antibody Acquisition for Immune Profiling

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Antibodies to phosphoAkt, phosphoSrc, phosphoSTAT3, and β-catenin were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies to MART1, MelanA, CD8, and actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies to CD4, CD11b, CD25, NK1.1, IFN-γ and Ad5 were purchased from Novus Biologicals (Littleton, CO, USA). Antibody to CD11b+c was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Antibodies to CD3-FITC, CD4-PE/Cy7, CD25-APC, and CD11c were purchased from Abcam (Cambridge, UK). Antibodies to CD122-PE/Cy7, CD8a-APC, FoxP3-PE, and NK1.1-APC were purchased from Biolegend (San Diego, CA, USA). All other chemicals were purchased from Sigma-Aldrich (St Louis, MO, USA).
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3

Immunohistochemical Analysis of Lacrimal Gland

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The lacrimal glands were cut into 6-µm sections using a microtome. The sections were fixed with pre-cooled acetone for 5 minutes, and then incubated with primary antibodies for TNF-α (Abcam Inc., Cambridge, MA), MMP-9 (Lifespan Biosciences Inc., Seattle, WA), ICAM-1, VCAM-1 (Bioss Inc., Woburn, MA), CD 4, IFN-γ (Novus Biologicals, Littleton, CO), IL-1β, IL-6, IL-17 (Abcam, Inc., Cambridge, UK), and IL-8 (Biorbyt, Cambridge, UK) for 1 hour at room temperature. After washing, the sections were incubated with the secondary antibody (DAKO Corp, Glostrup, Denmark) for 30 minutes. The immune reactions were visualized with diaminobenzidine chromogen, and the sections were counterstained with Mayer’s hematoxylin (Sigma) for 30 seconds at room temperature. The stained sections were photographed with a virtual microscope (NanoZoomer 2.0 RS, Hamamatsu, Japan). The calculated data were compared with the densitometry of the control group analyzed with ImageJ (National Institutes of Health, Bethesda, MD, USA).
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4

Mouse Macrophage Polarization Assay

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Mouse macrophage cell line RAW 264.7 and WBC264-9C was purchased from ATCC (Virginia, USA). DMEM media (RAW 264.7) and grown in Eagle’s minimum essential medium (WBC264–9C) supplemented with 10% fetal bovine serum (FBS), sodium bi-carbonate (1.5 gm/L), 100 U/mL penicillin, and 100 µg/mL streptomycin at 37 °C with 5% CO2 atmosphere according to ATCC recommendations. Cells were treated with 20 ng/mL GM-CSF (#NBP2–35066, Novus Biologicals), 20 ng/mL M-CSF (#14–8983–62, ThermoFisher), 40 ng/mL IL-4 (#574306, BioLegend), 1000 IU/mL IFNγ (#NBP2–35071, Novus Biologicals), 0.5 μg/mL lLipopolysaccharide (#00–4976–93, ThermoFisher), 25 μM cycloheximide (#0970, R&D Systems) dissolved in serum-free DMEM. All RAW 264.7 cell experiments were done with cells between passage 4 and passage 8. Cells were exposed to a brief period of serum starvation in serum-free DMEM for 3 h followed by stimulation with pro-inflammatory stimuli (LPS, GM-CSF, and IFNγ), anti-inflammatory stimuli (M-CSF and IL-4), and cycloheximide (CHX) at above-mentioned doses for stated durations.
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5

Protein Isolation and Quantification from EVs and Cells

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Total protein was isolated from EVs and cultured cells with a radioimmunoprecipitation assay (RIPA) lysis and extraction buffer (Thermo Fisher Scientific), and protein concentrations were detected by a BCA protein assay kit (Pierce, Rockford, IL, USA). Thirty micrograms of proteins from each sample was separated on an 8% SDS-PAGE gel and electrophoretically transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Boston, MA, USA). Membranes were blocked with 2% BSA in TBS containing 0.1% Tween 20 at 37°C for 2 hr and then incubated for 2 hr with either CD63 (Santa Cruz, CA, USA), Calnexin (Cell Signaling Technology), NKG2D (R&D Systems), FasL (R&D Systems), TNF-α (NOVUS, Littleton, CO, USA), IFN-γ (NOVUS), perforin (Invitrogen), tubulin (NOVUS), MHC class I (Abnova, Beijing, China), MHC class II (NOVUS), CD80 (Bio-Rad Laboratories, Hercules, CA, USA), CD86 (R&D Systems), and CD40 (R&D Systems). Horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG was used as a secondary antibody (diluted 1:5,000 in TBST with 2% BSA and incubated for 1 hr). Bands were scanned using a densitometer (GS-700; Bio-Rad Laboratories), and quantification was performed using Quantity One 4.4.0 software.
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6

Quantification of Immune Cytokines

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Cytokine levels in the supernatant of cultured cells were measured by an ELISA kit according to the manufacturer’s recommendation. Values were calculated based on a standard curve of recombinant cytokines. The results are expressed as picograms per milliliter (pg/mL). IFN-β (Cat# VAL612, Novus Biologicals) and TNF-α (Cat# VAL609, Novus Biologicals) levels in the supernatant of BMDCs were quantified. For detecting the cytokines level in the supernatant of cultured splenic or pulmonary lymphocytes, cells were cultured at a concentration of 2 × 106/ml and stimulated with the antigens PT (2 μg/ml), FHA (2 μg/ml), and PRN (2 μg/ml). Supernatants were removed after 3 days and stored at -20°C before testing. IFN-γ (Cat# VAL607, Novus Biologicals), TNF-a (Cat# VAL609, Novus Biologicals), and IL-2 (Cat# VAL602, Novus Biologicals) levels were measured for Th1 responses; IL-5 (Cat# KA0253, Novus Biologicals) and IL-6 (Cat# VAL604, Novus Biologicals) levels were detected for Th2 responses; and IL-17A (Cat# VAL610, Novus Biologicals) and IL-22 (Cat# M2200, R&D Systems) levels were tested for Th17 responses (33 (link), 34 (link)).
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7

Modulating PD-L1 Expression in Prostate Cancer

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Human PCa cell lines (PC-3 and DU-145) and mouse PCa cell lines (RM-1) were purchased from the American Type Culture Collection (ATCC, USA). The cell lines were cultured in the recommended media containing 10% FBS and 1% penicillin/streptomycin. The cells were treated with IFN-γ (Novus, USA) to induce PD-L1 expression. RelB was silenced in PC-3 and DU-145 cells by transfection of a plasmid-carrying shRNA duplex targeting RelB (RiboBio Co., Ltd., China) and stable cell clones were selected using G418 (Invitrogen, USA). Additionally, to restore RelB activity in RelB-defective PC-3 cells, a RelB cDNA driven by the CMV promoter in pCMV-Script vector (Stratagene, USA) was transiently transfected into RelB-silenced cells. Furthermore, RelB was knocked out (RelB-KO) in RM-1 cells using a CRISPR/Cas9-based gene-editing system. Briefly, RM-1 cells were transfected with a Cas9-single guide RNA (sgRNA) expression plasmid targeting RelB (sgRNA, 5′-GACGAATACATTAAGGAGAA-3′), followed by puromycin selection. In addition, PD-L1 cDNA was cloned into the pcDNA plasmid and then transfected into RelB-KO RM-1 cells, followed by hygromycin B (Invitrogen) selection to generate a stable cell line.
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