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6 protocols using ab187041

1

Protein Expression Analysis in Rat Hippocampus

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Proteins were extracted from rat hippocampal tissues using radio immunoprecipitation assay buffer (Beyotime) and quantified with a bicinchoninic acid assay kit (Thermo Scientific, Waltham, MA, USA). Equal amounts (20 µg) of tissue samples were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis and blotted onto the polyvinylidene fluoride membranes (Bio‐Rad, Hercules, CA, USA). After being blocked with 5% defatted milk, the membranes were incubated with primary antibodies against: Bax (ab32503, 1:1,000, Abcam), cleaved (C)-caspase3 (#9661, 1:1,000, Cell Signaling, Danvers, MA, USA), phosphorylated (p)-TrkB (ab229908, 1:1,000, Abcam), TrkB (ab187041, 1:5,000, Abcam), p-PI3K (ab182651, 1:1,000, Abcam), PI3K (ab191606, 1:1,000, Abcam), proBDNF (p1374, 1:400, Sigma–Aldrich), mBDNF (ab108319, 1:1,000, Abcam) and glyceraldehyde-3-phosphate dehydrogenase (ab181602, 1:10,000, Abcam) at 4°C overnight, followed by incubation with the horseradish peroxidase-conjugated goat anti-rabbit secondary antibody (ab7090, 1:1,000, Abcam) at room temperature for 2 h. Eventually, protein bands were visualized with an enhanced chemiluminescence kit (Bio-Rad), and the intensity values were analyzed with C‐Digit software (LI-COR Biosciences, Lincoln, NE, USA).
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2

Western Blot Analysis of PFC Proteins

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PFC protein extracts from 2-month-old mice were prepared for western blot analysis as described [47 (link), 48 (link)]. Primary monoclonal antibodies to pY706-trkB (Abcam, ab197072), trkB (Abcam, ab187041), PTP1B (Abcam, ab245984) and to actin (Sigma, ab179467) were used.
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3

Hippocampal Protein Analysis by Western Blot

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Hippocampal tissues were homogenized in RIPA cell lysate (Beyotime, P0013B), centrifuged at 12,000 × g for 15 min, and the supernatant was collected. Each protein sample was loaded into the sodium dodecyl sulfate-polyacrylamide gel electrophoresis gel spiked wells. Electrophoresis was performed at constant pressure of 80 V for approximately 1 h. The proteins were transferred to a polyvinylidene fluoride membrane (Millipore, IPVH00010), fixed with western closure solution (5% skim milk powder), slowly shaken on a shaker for 2 h at room temperature, and then incubated with the following primary antibodies: rabbit anti-postsynaptic density-95 (PSD-95) antibody (1:2000, abcam, ab238135), rabbit anti-synaptophysin (SYN) antibody (1:1000, Bioss, bs-8845R), rabbit anti-BDNF antibody (1:1000, abcam, ab108319), and rabbit tyrosine kinase receptor B (TrkB) antibody (1:5000, abcam, ab187041). The samples were further incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG secondary antibody (1:20000, Zsbio, ZB-2301) for 1.2 h. The membranes were washed with phosphate-buffered saline with Tween and the ECL luminescence kit (Thermo, 340,958) was used to detect the proteins. Finally, the intensity of the bands was analyzed by Image J software (Media Cybernetics, United States).
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4

Western Blot Analysis of Hippocampal BDNF-TrkB Signaling

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Western blot analysis was performed as described previously.
7 (link),
24 (link) The hippocampal tissues were collected at 1, 2, 3, 7, and 14 days after HI insults and immediately placed on ice. The tissues were then homogenized with a protease and phosphatase‐supplemented lysis buffer. Next, by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, equal amounts of proteins (40 μg/well) were separated and transferred to polyvinylidene fluoride membranes. Subsequently, the membranes were incubated overnight at 4°C with the following primary antibodies: anti‐BDNF (ab108319, Abcam), anti‐TrkB (phospho Y705) (ab229908, Abcam), anti‐TrkB (ab187041, Abcam), anti‐CREB (phospho S133) (ab32096, Abcam), anti‐CREB (ab32515, Abcam) and anti‐β‐actin (ab8227, Abcam). The following day, the membranes were incubated at room temperature for 2 h with the secondary antibodies (ab205718, Abcam). We visualized and photographed protein bands using enhanced chemiluminescence substrate kits (ab133406, Abcam) and a GE Amersham Imager 600 (AI600; GE Healthcare). Full unedited gel/blot from this study can be found in Data S1.
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5

Western Blot Analysis of Hippocampal Proteins

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The RIPA cell lysis solution (Beyotime, P0013B) was added to the hippocampal tissue for lysis. It was then centrifuged at 12,000 × g for 15 min, after which the supernatant was carefully collected. Protein samples were loaded into SDS–PAGE gel spiked wells. Following constant pressure 80 v electrophoresis for 1 h, samples were transferred to a PVDF membrane (Millipore, IPVH00010), specific transfer times were 60 min for PSD‐95, 35 min for SYN, 20 min for BDNF, and 65 min for TrkB. After the film transfer, western blocking solution (5% skim milk powder) was added and blocked for 2 h at room temperature. Then, the membranes were incubated with diluted rabbit antibodies against PSD‐95 (1:2000, Abcam, ab238135), SYN (1:1000, Bioss, bs‐8845R), BDNF (1:1000, Abcam, ab108319), and TrkB (1:5000, Abcam, ab187041) overnight at 4°C. Membranes were then incubated for 1.2 h at room temperature with a horseradish peroxidase‐conjugated goat anti‐rabbit immunoglobulin G (1:20000, Zsbio, ZB‐2301). Proteins were detected using an ECL ultrasensitive luminescence kit (Thermo, 340958) according to the manufacturer's instructions. ImageJ software was used for bands analysis (Media Cybernetics).
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6

Western Blot Analysis of Neuronal Proteins

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Western blotting was conducted as previously described with minor modifications (Shi et al., 2017 (link)). Proteins were separated on SDS-PAGE and transferred to nitrocellulose membranes (Millipore, Bedford, MA, United States). After blocking for 2 h in 5% nonfat milk in Tris-buffered saline with Tween-20 (TBST), the membranes were incubated overnight at 4°C with primary antibodies against Phospho-Akt (ab4060, 1:2000), BDNF (ab108319, 1:2000), Cytochrome C (ab133504, 1:5000), BAX (ab32503, 1:2000), Bcl-2 (ab194583, 1:1000), PSD95 (ab18258, 1:1000), TrkB (ab187041, 1:5000), Mitofusin 2 (ab133504, 1:5000) (all from Abcam Ltd., Cambridge, United Kingdom), and GAPDH (A19056, 1:1000; ABclonal Technology Co., Ltd., Wuhan, China). The membranes were then incubated for 1 h with a horseradish peroxidase-conjugated secondary antibody. An ECL Prime Kit was used to view the protein bands, and ImageJ 1.46r software (NIH, United States, RRID: SCR_003070) was used for quantification.
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