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13 protocols using peg 6000

1

Cell Cycle Arrest Analysis of MDA-MB-468 Cells

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The cell cycle arrest analysis was carried out as previously described.48 Briefly, 1 × 106 MDA-MB-468 cells were infected as described above (Cell Lines and Viral Transductions). Thirty six hours post-infection, cells were collected, washed in PBS (Invitrogen), and fixed in 70% cold ethanol at −20°C for 1 h. Fixed cells were then washed three times with PBS and suspended in a staining solution containing 10 % v/v of 0.5 mg/mL propidium iodide (Sigma-Aldrich, St. Louis, MO), 5% v/v of PBS, 84 % v/v of 4mM Citrate Buffer (Sigma-Aldrich), 0.62 %v/v of RNase A (Sigma-Aldrich), 1% v/v of Triton X-100 (Sigma-Aldrich), and 3% m/v of PEG 6000 (Fluka, St. Louis, MO) for 20 min at 37°C in the dark. An equal volume of salt solution containing 5% of propidium iodide, 1% of Triton X-100, 89% v/v of 0.4M NaCl (Thermo Fisher Scientific Inc, Pittsburgh, PA), and 3% m/v of PEG 6000 was added to the stained cells and incubated at 4°C for 1 h in the dark. Cells were gated at similar intensity level of ZsGreen1. ZsGreen1 and PI were excited at 488 nm and detected at 507 nm and 670 nm, respectively. The means from three separate experiments (n=3) were analyzed using one-way ANOVA with Bonferroni’s post hoc test.
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2

Canine Distemper Virus Propagation

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Mv. l. Lu cells in this study were maintained in Minimal Essential Media (MEM, Gibco, Life Technologies, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS) (Invitrogen, Waltham, MA, USA) and cultured at 37°C in a 5% CO2 incubator. CDV PS strain (GenBank No.: JN896331) was isolated from dogs of CD in 2013 by our laboratory (22 (link)). Due to the low viral titer of PS strain and the presence of cytokines in the virus venom, the virus was proliferated by Mv. l. Lu cells and then collected. The virus was concentrated by PEG 6000 (Thermo Fisher Scientific, Waltham, MA, USA) and purified by super centrifugation using the sucrose gradient method (23 (link)). The purified viruses were stored at −80°C before use. The titer of the virus was determined by the median tissue culture infective dose method (24 (link)).
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3

Formulation and Characterization of Albendazole

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Albendazole was procured from Bidepharm Company, while PEG6000 was obtained from Thermo-scientific Company. Poloxamer 188 was sourced from Rhawn Company, and PVP K30 was acquired from TCI Company. The simulated gastric fluid (SGF) utilized in the experiment was supplied by MesGen Biotechnology. The albendazole tablet was from Tianjin Smith Kline &French Laboratorles Ltd. All additional reagents and chemicals employed for analysis and dilution purposes were of analytical grade.
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4

Cell Cycle Arrest Analysis of MDA-MB-468 Cells

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The cell cycle arrest analysis was carried out as previously described.48 Briefly, 1 × 106 MDA-MB-468 cells were infected as described above (Cell Lines and Viral Transductions). Thirty six hours post-infection, cells were collected, washed in PBS (Invitrogen), and fixed in 70% cold ethanol at −20°C for 1 h. Fixed cells were then washed three times with PBS and suspended in a staining solution containing 10 % v/v of 0.5 mg/mL propidium iodide (Sigma-Aldrich, St. Louis, MO), 5% v/v of PBS, 84 % v/v of 4mM Citrate Buffer (Sigma-Aldrich), 0.62 %v/v of RNase A (Sigma-Aldrich), 1% v/v of Triton X-100 (Sigma-Aldrich), and 3% m/v of PEG 6000 (Fluka, St. Louis, MO) for 20 min at 37°C in the dark. An equal volume of salt solution containing 5% of propidium iodide, 1% of Triton X-100, 89% v/v of 0.4M NaCl (Thermo Fisher Scientific Inc, Pittsburgh, PA), and 3% m/v of PEG 6000 was added to the stained cells and incubated at 4°C for 1 h in the dark. Cells were gated at similar intensity level of ZsGreen1. ZsGreen1 and PI were excited at 488 nm and detected at 507 nm and 670 nm, respectively. The means from three separate experiments (n=3) were analyzed using one-way ANOVA with Bonferroni’s post hoc test.
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5

Edible Sunflower Oil Formulations

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Edible sunflower oil (Zvijezda plus d.o.o., Zagreb, Croatia) was purchased from a local supermarket. Polyethylene glycols with average molecular weights of 1500 g/mol (PEG 1500) and 6000 g/mol (PEG 6000) were purchased from Acros Organics (Geel, Belgium), while the 20,000 g/mol polyethylene glycol (PEG 20,000) was obtained from Sigma-Aldrich (Taufkirchen, Germany). Dried mint leaves (Mentha piperita L.) were purchased from Suban, Croatia. Plant materials were collected during the flowering season of 2019 in the north-western part of Croatia, dried naturally, and stored in ambient conditions before use.
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6

3D Printed CPC Scaffolds for Anti-Cancer Drug Delivery

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CPC scaffolds with interconnected pores (diameter 5mm, thickness 2 mm) were printed by a semi-solid extrusion 3D printer (Innotere, Radebeul, Germany) using calcium phosphate semi-solid paste (α-tricalcium phosphate and calcium-deficient hydroxyapatite). All 3D printed scaffolds were subjected to coating using a polymeric solution of a model anti-cancer drug 5-Fluorouracil (5-FU, Acros Organics™, 99%, Fair Lawn, NJ, USA). Soluplus® (BASF Ltd., London, UK) and polyethylene glycol (PEG 6000, Acros Organics™, Ludwigshafen, Germany) were used. We used 0.9% NaCl solution as the dissolution medium in the dissolution test. Cancer and transformed cell lines, HeLa and HEK293T, stably expressing GFP constructs were generated at the GDSC, University of Sussex, Brighton, UK. Cell lines were maintained in DMEM supplemented with 10% FCS, penicillin/streptomycin and L-Glutamine at 37 °C and 5% CO2. PBS (pH = 7.4, Fisher Scientific, Loughborough, UK) was used for washing.
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7

Comprehensive Reagent Acquisition for Research

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L-Proline (>99%), PEG 6000, ninhydrin, 2,2′-azobis(2 methylpropionamidine)dihydrochloride (AAPH), (±)-6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid (Trolox) and potassium ferricyanide (K3[Fe(CN)6]) were acquired from Acros Organics (Geel, Germany). Lactic acid, and fluorescein were purchased from Panreac (Barcelona, Spain). Sodium carbonate anhydrous (Na2CO3), ferric chloride (FeCl3), Folin-Ciocalteu’s reagent, and gallic acid were acquired from VWR (Leuven, Belgium). Ascorbic acid, acetic acid, and potassium iodide were acquired from Merck (Darmstadt, Germany). Salicylic acid (SA), methyl jasmonate (MeJA), Fe3O4 nanoparticles (50–100 nm), hydrogen peroxide (H2O2), trichloroacetic acid (TCA), L- proline (≥99%), 2,2-diphenyl-1-picrylhydrazyl (DPPH), 3,4-dihydroxy-L-phenylalanine (L-DOPA), 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt tablets (ABTS), mushroom tyrosinase (EC 1.14.18.1), kojic acid, potassium persulfate (K2S2O8), potassium bromide, HPLC-MS-grade water, HPLC-MS-grade acetonitrile, luteolin, epigallocatechin gallate, protocatechuic acid, and formic acid were obtained from Sigma–Aldrich (Steinheim, Germany). Rosmarinic acid and quercetin were supplied by Extrasynthese (Genay, France), and ρ-coumaric, caffeic acid, and catechin were provided by AASC Ltd. (Southhampton, UK).
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8

Virus Recovery from Fresh Produce

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Recovery of viruses from fresh produce samples was performed as described in López-Gálvez et al. (2016) , with some modifications. Briefly, lettuce samples (25 g) were placed in sterile stomacher bags with filter and soaked in 40 mL of elution buffer for 20 min at room temperature with constant shaking. The fluid was recovered from the bag and centrifuged at 8500 g for 30 min at 4 °C. Then, pH of the decanted supernatant was adjusted to 7.2 ± 0.2 using HCl. Polyethylene glycol (PEG) 6000 (Acros Organics, Geel, Belgium) and sodium chloride (NaCl) (Panreac Química, Barcelona, Spain) were added to the neutralized supernatant. Subsequently, fluid was incubated for 2 h at 4 °C.
Viruses were concentrated by centrifuging the solution at 8500 g for 30 min at 4 °C.
The supernatant was discarded, and additional centrifugation was carried out at 8500 g for 5 min at 4 °C to compact the pellet. The pellet was finally re-suspended in 1 mL of phosphate-buffered saline and stored at -75 °C before RNA extraction. Mengovirus was added as process control. RNA extraction and RT-qPCR reactions from lettuce samples were performed as described above for water samples.
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9

Optimized Protein Purification Protocol

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Unless specified, all chemicals were obtained from Sigma-Aldrich. PEG-6000 (molecular weight: 6 kDa) was purchased from Fisher (Pittsburg, PA). A 50% (w/v) stock solution of PEG-6000 was prepared in nuclease-free water before being used in experiments. BSA was purchased from New England Biolabs. GroEL/ES were obtained from Takara; DnaJ was obtained from Accurate Chemical & Scientific Corporation, DnaK and GrpE were obtained from Novus Biologicals. Tryptone and yeast extract were obtained from BD Difco. For protein purification, liquid cultures of all strains were grown in SB media (24 g/L tryptone, 12 g/L yeast extract, 5 g/L glucose, 2 g/L NaH2PO4, 16.4 g/L K2HPO4-3H2O, 4 mL/L glycerol). Protein purifications were carried out with ÄKTAprime (GE Healthcare) equipped with 5 mL HisTrap HP column (GE Healthcare). Purified protein concentrations were determined by standard Bradford assay (Bio-Rad).
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10

Purification of Hyperimmune IgY from Egg Yolk

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The hyperimmune egg yolk generated in our recent study (9 (link)) was used for IgY purification following a published protocol (10 (link)) with slight modifications. Briefly, one volume of egg yolk was diluted with four volumes of PBS and then mixed with 3.5% (w/v) of polyethylene glycol 6000 (PEG 6000, Fisher Scientific, MA, USA) for lipid removal. After 20 min of incubation at room temperature, the mixture was centrifuged at 5,000g for 20 min. Subsequently, the supernatant was added with 12% (w/v) of PEG 6000 for IgY precipitation and the mixture was incubated at room temperature for 10 min. Following centrifugation at 5,000g for 20 min, the precipitate was dissolved in PBS and added with 12% (w/v) of PEG 6000 again for another round of IgY precipitation. After centrifugation, the precipitate was dissolved in a small volume of PBS, added with equal volume of precooled (−20°C) ethanol, and centrifuged at 5,000g and 4°C for 20 min to remove PEG 6000. Lastly, the precipitate containing a high proportion of IgY was dissolved in a small volume of PBS and the solution was dialyzed against PBS. Initial egg yolk, the supernatant and precipitate fractions obtained from the centrifugation of 12% PEG 6000 mixture, and the final dialyzed IgY extract were subjected to SDS-PAGE analysis.
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