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10 protocols using horseradish peroxidase hrp

1

Protein Expression Analysis in Lung Tissues

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Lung tissues were washed three times with ice-cold PBS and lysed in RIPA lysis buffer. Protein concentration was determined using the BCA assay (Thermo Fisher Scientific). Samples were run using 10% sodium dodecyl sulfate (SDS)—polyacrylamide gels (PAGE) and electro-transferred onto nitrocellulose membranes (Bio-Rad). After blocking in 5% non-fat dry milk in TBST at room temperature for 1 h, the membranes were washed and immunoblotted with primary antibodies COX-2 (1:1000, #12,282), TLR4 (1:1000, #14,358), NF-κBp65 (1:1000, #8242), p-NF-κBp65 (1:1000, #3033), AIM 2 (1:1000, #63,660), HIF-1α (1:1000, #36,169) and GAPDH (1:5000, Wuhan Sanying, 60,004-1-Ig) overnight at 4 ℃. Then incubated with a secondary antibody conjugated with horseradish peroxidase (HRP) (1:2000; Beyotime, A0208). Enhanced chemiluminescence reagent (ECL) detection system (Thermo Fisher Scientific) was used to detect immunoreactive bands. All acquired images were calculated by Image J (v1.53e).
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2

Quantifying Binding Affinity of Recombinant Proteins

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As reported34 (link),35 (link), lipid-A (sigma) were diluted in DMSO an initial amount of 50 μM/well, and the solvent (80 μL) was coated in Nunc-Immuno™ MicroWell™ 96-Well Plates (Thermo Scientific) by overnight incubation at 4 °C. Remove the solvent and blocked with a 3% (w/v) BSA in PBS for overnight at 4 °C. Thoroughly washed with PBS containing 0.05% Tween-20, and subsequently incubated with twofold serial dilutions (starting at 100 μM) of His-tagged proteins (MucAperi, MucB, and MucB mutants) for overnight at 4 °C, the concentration gradients are 0.05, 0.1, 0.2, 0.4, 0.8, 1.6, 3.125, 6.25, 12.5, 25, 50, and 100 μM. The plates were then washed for five times with PBS, incubated with mouse anti-His antibody (Invitrogen) for 2 h, washed again for five times with PBS, incubated with horseradish peroxidase (HRP)-conjugated goat anti-mouse secondary antibody diluted 1:5000 in 1% BSA in PBS, and washed, as a final washing stage, for five times again with PBS. Finally, the bound proteins were detected using TMB-ELISA substrate solution (Horseradish Peroxidase-HRP, beyotime). After incubated for 30 min at room temperature, the reaction was stopped by addition of 1 N HCl. Optical density (OD) was subsequently measured at 450 nm. Each experiment was performed three times, and each point is a mean of three replicates ± SD.
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3

Protein Expression Analysis in HCT-8 Cells

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HCT-8 cells were seeded in 6-well plates at 2 × 105 cells in 2000 μl per well, incubated at 37 °C, saturated humidity and 5%CO2. Then, the cells were treated with drugs for 48 h. The original medium was discarded, and the samples were collected by lysing cells in RIPA lysis buffer (G2002, Servicebio, Wuhan). Part of the supernatant was taken and the protein concentration was measured by BCA method; 4X loading buffer was added into the rest of the supernatant for Western blot. The supernatant was incubated in boiling water for 5 min. The mass of protein loaded per lane was 40 µg. Each sample was size fractionated using SDS‐polyacrylamide gel electrophoresis (PAGE) and electro transferred onto PVDF membranes. After bolted with milk, the membranes incubated with primary antibodies (P21, 21KD, Affinity Bioscience, USA; CDK2, 34KD, Novus Biologicals, USA; β-actin, 42KD, Affinity Bioscience, USA; GAPDH, 37KD, Goodhere Biotechnology, Hangzhou; GRP78, 70-78KD, Proteintech, Wuhan) overnight at 4 °C and then blotted with horseradish peroxidase conjugated secondary antibodies (Horseradish peroxidase (HRP)) (Beyotime Biotechnology, China). The immunoblots were visualized using the ChemiDocTM XRS+ imaging system (Bio rad Company, USA). Results are from 3 independent experiments.
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4

Investigating Epithelial-Mesenchymal Transition and Apoptosis

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Incubated cells were treated with serum-free medium, Pep1, Pep2, DC, DOX/Pep2, DOX/Pep1, DC/Pep2, or DC/Pep1 for 24 h. RIPA lysis buffer was used to extract total protein from cells. SDS‒PAGE was used to isolate and transfer 20 μg protein samples onto 0.45 μm PVDF membranes. E-cadherin (dilution 1:1000, Beyotime), Vimentin (dilution 1:3000, Beyotime), Caspase-3 (dilution 1:3000, Beyotime), and β-actin (dilution 1:3000, Beyotime) rabbit monoclonal antibodies were added for incubation overnight at 4 °C after blocking. Samples were incubated with secondary antibodies coupled with horseradish peroxidase (HRP) at a dilution of 1:1000 (Beyotime) for a period of 1–2 h, followed by development using enhanced chemiluminescence (ECL) reagents.
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5

ELISA for MD-2 Binding Inhibition

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ELISA for determination of L2H21's competition against LPS for binding to MD‐2 was performed in 96‐well plates. The 96‐well plates were coated with MD‐2 antibody at 4°C overnight and blocked with 3% bovine serum albumin (BSA) for 2 hrs at room temperature. Then, rhMD‐2, rhMD‐2/R90A or rhMD‐2/Y102A protein (4 μg/ml, respectively) diluted in 10 mM Tris‐HCl (pH 7.5) solution was added to the plate, incubated for 1.5 hrs and biotin‐LPS (InvivoGen, San Diego, CA, USA) was added to the plate in the presence or absence of L2H21 (0.1 or 1.0 μM). After incubated with horseradish peroxidase (HRP; Beyotime Biotech, Nantong, China) for 1 hr at room temperature, TMB (Beyotime Biotech) was added to the plate under dark condition for 15 min. The reaction was finally stopped with 2 N H2SO4 solution. The absorbance values were measured at 450 nm.
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6

Protein Expression Analysis with SDS-PAGE

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After being treated as described in method 2.6 and washed using PBS three times, cells derived from each group were collected and lysed using RIPA buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing a protease inhibitor of 1 mM PMSF according to the supplier's instructions. Protein concentrations were determined using BCA method. Equal amounts of proteins were loaded and isolated using a sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and subsequently transferred onto a PVDF membrane. After being blocked with 5% skim milk, membranes were incubated with primary antibody (Nfr2, 1:2000 dilution; HO-1, 1:10000 dilution; NOO1, 1:20000 dilution; Abcam) and goat anti-rabbit secondary antibody were conjugated to horseradish peroxidase (HRP) (1:200 dilution) (Beyotime Institute of Biotechnology, Shanghai, China). β-actin was used as internal reference.
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7

Immunohistochemical Analysis of CD24 and Notch1

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Tumor samples were formalin-fixed and embedded in paraffin. Paraffin sections were stained with the first antibody for CD24 (1:200; sc-7034) and Notch1 (1:200; sc-376403) (Santa Cruz Biotechnology) by incubating overnight at 4°C. Secondary staining with biotinylated secondary antibodies with horseradish peroxidase (HRP; Beyotime Biotechnology, Nanjing, People’s Republic of China) was performed for 30 min at room temperature. Then, the sections were counterstained with hematoxylin (Beyotime).
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8

Optimization of Cell Culture Conditions

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Fetal bovine serum (FBS) was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Horseradish peroxidase (HRP) and 3,3′,5,5′-tetramethylbenzidine (TMB) were purchased from Beyotime Biotechnology (Jiangsu, People’s Republic of China). Endo Free Plasmid Kit was purchased from QIAGEN. GC cell lines MKN-45 and HGC-27, gastric mucosal cell lines GES-1 and RGM-1, CRC cell lines HCT-116 and SW480, and intestinal epithelial cell lines HIEC-6 and NCM-460 were purchased from BeNa Culture Collection (Shanghai, People’s Republic of China). Cells were cultured in RPMI1640 medium (Gibco-BRL, Grand Island, NY, USA) supplied with 10% FBS, penicillin (100 U·mL−1), and streptomycin (100 μg·mL−1) at 37°C in a cell incubator with 5% CO2. Radioimmunoprecipitation assay buffer, extraction buffer, and protein A/G beads were purchased from Beyotime Biotechnology. All other chemicals and reagents (which were of analytic grade) were purchased from Sino Pharm Chemical Reagent Co. Ltd. and used as received.
The chemiluminescence signal of TMB was detected with an iMARKT Microplate Reader (Bio-Rad, Hercules, CA, USA). The ultraviolet−visible light measurements were performed on a NanoDrop 2000 spectrometer (Thermo Fisher Scientific). The Bio-Rad 1575 Plate Washer was purchased from Bio-Rad.
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9

Western Blot Analysis of Protein Expression

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The expressions of related proteins were examined using WB. Briefly, total protein was extracted using RIPA lysis buffer (Beyotime), and protein lysis products were quantified using a bicinchoninic acid (BCA) kit (Solarbio). Subsequently, 20 μg of protein was loaded onto SDS PAGE gels, followed by electrophoresis, membrane transfer, and closure. Then, the membranes were incubated with correspondent primary antibodies (ABclonal). The membranes were incubated with the secondary antibody solution labeled by horseradish peroxidase (HRP) (Beyotime), and the protein bands were detected using enhanced chemiluminescence (ECL) kit (Fdbio science) and scanned by gel imaging system. Using the Image J software, the blots (n = 3 per group) were quantified by a densitometric method. The results were expressed as mean ± SD.
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10

Cardiac Tissue Protein Analysis Protocol

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First,
we extracted cardiac tissue samples and then placed them in a cold
RIPA lysis buffer (beyotime biotechnology) containing proteinase and
phosphatase inhibitors (bimake). Next, we used a homogenizer to grind
the tissue and performed ultrasonic treatment using an ultrasonic
disruptor. We centrifuged at 4 °C (12 000 rpm, 10 min) and then
determined the total protein content in the supernatant using the
BCA protein assay kit (beyotime biotechnology). Subsequently, we balanced
the protein content in each group using 4x SDS loading buffer. The
tissue protein samples were subjected to electrophoresis in 8%–10%
SDS-PAGE (voltage 80–120v), stopping when bromophenol blue
reached the bottom to separate total proteins. Then, the constant
current wet transfer method was used at 300 mA for 60–90 min.
Next, we incubated the membrane with the primary antibody overnight
at 4 °C, followed by incubation with the secondary antibody conjugated
with horseradish peroxidase (HRP) from the appropriate species (beyotime
biotechnology) for 1 h, and finally, we visualized using a chemiluminescent
imager (Azure 300).15 (link) The primary antibodies
used included the following: anti-P-ERK1/2 (1:2 000), anti-ERK1/2
(1:2 000), anai-P-AKT (1:2 000), anti-AKT (1:2 000), anti-P-eNOS (1:1
000), anti-eNOS (1:1 000), and GAPDH (1:50 000). Signal results were
quantified by using ImageJ software.
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