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8 protocols using abi 7300 fast real time pcr detection system

1

Quantitative Real-Time PCR Transcriptome Analysis

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Quantitative Real-Time PCR (qPCR) was performed as described previously (17 (link)). Total RNA was obtained from the hepatic samples using Trizol Reagent (TaKaRa, Dalian, China) and then reverse-transcribed using a commercial kit (Perfect Real Time, SYBR@ PrimeScriptTM, TaKaRa) following the manufacturer's instructions. The mRNA expression levels of specific genes were quantified via real-time PCR using SYBR@Premix Ex TaqTM II (Tli RNaseH Plus) and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, Foster City, CA). The SYBR Green PCR reaction mixture consisted of 10 μl SYBR@Premix Ex Taq (2X), 0.4 μl of the forward and reverse primers, 0.4 μl of ROX reference dye (50X), 6.8 μl of ddH2O, and 2 μl of cDNA template. Each sample was amplified in triplicate. The fold-expression of each gene was calculated according to the 2−ΔΔCt method (17 (link)), and the β-actin gene was used as an internal standard. The primer sequences that were used are listed in Supplementary Table S1.
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2

Quantification of Gene Expression in Tissues

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Total RNA was isolated from frozen liver sample and small intestine tissues while using Trizol reagent (TaKaRa, Dalian, China) according to the manufacturer’s instructions. The quantity of the total RNA was measured with a Nanodrop ND-2000c spectrophotometer (Thermo Fisher Scientific, Camden, NJ). The cNDA was immediately synthesized by reverse transcription using a PrimeScript RT Reagent kit (Takara Biotechnology Co., Dalian, China).
The expression of genes in liver, jejunum, and ileum samples was measured while using real-time quantitative PCR (RT-qPCR) with SYBR Premix Ex Taq II kit (Tli RNaseH Plus; Takara Biotechnology) and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems). RT-qPCR was performed at 95 °C for 30 s, followed by 40 cycles of 95 °C for 5 s and 60 °C for 30 s. All of the samples were run in triplicate, and Table 2 shows the gene-specific primer sequences. The mRNA expression levels of genes were calculated while using the 2−ΔΔCt method and normalized to the value of the reference gene β-actin. The final result of each target gene expression was expressed as the percentage of the CON group.
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3

Liver Gene Expression Profiling in Mice

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Total RNA obtained from mice livers using Trizol Reagent (TaKaRa, Dalian, China) was reverse transcribed using a commercial kit (Perfect Real Time, SYBR® PrimeScript™ TaKaRa, China). The mRNA expression level of specific genes was quantified with real-time PCR using SYBR®Premix Ex Taq™ II (Tli RNaseH Plus) on an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, USA). The SYBR Green PCR reaction mixture comprised 10 μL SYBR®Premix Ex Taq (2×), 0.4 μL of the forward and reverse primers, 0.4 μL of ROX reference dye (50×), 6.8 μL of ddH2O, and 2 μL of cDNA template. Each sample was amplified in triplicates. The fold-expression of each gene was calculated according to the 2ΔΔCt method [18 ], with β-actin gene as an internal standard. The primer sequences used are given in Table 1.
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4

Quantitative RT-PCR Analysis of Gene Expression in Mouse Liver

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Total RNA was obtained from the mice liver using Trizol Reagent (TaKaRa, Dalian, China) and then reverse-transcribed using a commercial kit (Perfect Real Time, SYBR® PrimeScript TaKaRa, China) following the instructions of the manufacturer. The mRNA expression levels of specific genes were quantified via real-time PCR, using SYBR®Premix Ex Taq II (Tli RNaseH Plus) and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, USA). The SYBR Green PCR reaction mixture consisted of 10 μl SYBR®Premix Ex Taq (2X), 0.4 μl of the forward and reverse primers, 0.4 μl of ROX reference dye (50X), 6.8 μl of ddH2O and 2 μl of cDNA template. Each sample was amplified in triplicate. The fold-expression of each gene was calculated according to the 2-ΔΔCt method [26 ], in which the β-Actin gene was used as an internal standard. The primer sequences used are given in Table 1.
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5

Quantitative RT-PCR Analysis of Gene Expression

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Quantitative reverse transcription PCR (RT-qPCR) was performed as described previously (Bergqvist et al., 2007 (link)). Total RNA was extracted from jejunum samples using TRIzol Reagent (TaKaRa, Dalian, China) and then reverse-transcribed using a commercial kit (Perfect Real Time, SYBR PrimeScript, TaKaRa) according to the manufacturer's instructions. The mRNA expression levels of specific genes were quantified via real-time PCR using SYBR Premix Ex Taq II (Tli RNaseH Plus) and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, Foster City, CA). The SYBR Green PCR reaction mixture consisted of 10 μL SYBR Premix Ex Taq (2× ), 0.4 μL of the forward and reverse primers, 0.4 μL of ROX reference dye (50× ), 6.8 μL of ddH2O, and 2 μL of cDNA template. Each sample was amplified in triplicate. The fold-expression of each gene was calculated according to the 2−ΔΔCt method (Livak and Schmittgen, 2001 (link)), in which Actb was used as an internal standard. The primer sequences used are shown in Table S2.
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6

Quantifying Gene Expression in Meat Tissue

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Total RNA was obtained from meat tissue using Trizol Reagent (TaKaRa, Dalian, China), and then reverse-transcribed using a commercial kit (Perfect Real Time, SYBR® PrimeScript™ TaKaRa, China) following the instructions of the manufacturer. The mRNA expression level of specific genes were quantified via real-time PCR, using SYBR®Premix Ex Taq™ II (Tli RNaseH Plus), and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, USA). The SYBR Green PCR reaction mixture consisted of 10 μl SYBR®Premix Ex Taq (2X), 0.4 μl of the forward and reverse primers, 0.4 μl of ROX reference dye (50X), 6.8 μl of ddH2O, and 2 μl of cDNA template. Each meat tissue was amplified in triplicate. The fold-expression of each gene was calculated according to the 2-ΔΔCt method [20 ], in which β-Actin gene was used as an internal standard. The primer sequences used are given in Table 1.
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7

Liver RNA Extraction and RT-qPCR Analysis

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Total RNA was extracted from liver samples using the Trizol reagent (TaKaRa Biotechnology Co., Dalian, China), according to the manufacturer’s instructions. The concentration of RNA in the final preparations was measured with a Nanodrop ND-2000c spectrophotometer (Thermo Fisher Scientific, Camden, USA). Reverse transcription was immediately performed using the Primer-ScriptTM reagent Kit (Takara Biotechnology Co., Dalian, China).
The expression of genes in liver was measured using real-time quantitative PCR (RT-qPCR) with SYBR Premix Ex Taq II kit (Tli RNaseH Plus; Takara Biotechnology) and an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems). The 20 μL reaction system included 2 μL of cDNA template, 0.4 μL of ROX reference dye (50×), 10 μL of SYBR Premix Ex Taq (2×), 0.4 μL of each forward and reverse primer, and 6.8 μL of double-distilled H2O. The RT-qPCR cycling conditions were as follows: 95 °C for 30 s, followed by 40 cycles of 95 °C for 5 s and 60 °C for 30 s. All of the samples were run in triplicate, and the mRNA expression level of genes were calculated using the 2−ΔΔCt method and normalized to the value of the reference gene β-actin. The final result of each target gene expression was expressed as the percentage of the CONT group. Primer sequences are shown in Table 2.
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8

Quantitative Real-Time PCR for Gene Expression

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Quantitative real-time PCR (qPCR) was conducted according to the method described before (Mohamed et al., 2010 ). Total RNA from each jejunum samples was extracted using a Trizol Reagent kit (TaKaRa, Dalian, China) and then reverse-transcribed with a kit (Perfect Real Time, SYBR PrimeScript, TaKaRa) following the manufacturer's instructions. The mRNA expression levels of genes listed in Appendix Table 2 were quantified via real-time qPCR using SYBR Premix Ex Taq II (Tli RNaseH Plus, TaKaRa) with an ABI 7300 Fast Real-Time PCR detection system (Applied Biosystems, Foster City, CA, USA). The β-actin was acted as an internal standard. The qRT-PCR amplification efficiency was calculated according to specific gene standard curves generated from serial dilutions. The gene expression levels of the target genes were analyzed by the 2−ΔΔCt method (Mohamed et al., 2010 ) after verifying that the primers were amplified with an efficiency of approximately 100%, and data for IUGRC and IUGRD groups were compared with the data for the NBWC group.
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