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24 protocols using tert amyl alcohol

1

Comprehensive Reagent Procurement for Multidisciplinary Research

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Glutathione (reduced form) was purchased from Wako Pure Chemical (Osaka, Japan). Pectin and agar were purchased from Yakuri Co., Ltd. (Osaka, Japan). Sodium alginate, PEG (average molecular weight: 8000), sodium nitrite, crystal violet, Lugol’s solution, 2,2,2 tribromoethanol, tert-amyl alcohol, Mayer’s hematoxylin, and eosin-Y disodium were purchased from Sigma-Aldrich (St. Louis, MO, USA). Bacto™ tryptic soy broth (TSB) and Difco™ cetrimide-agar media were purchased from BD Biosciences (San Jose, CA, USA). A Twort’s Gram stain set was purchased from Newcomer Supply (Middleton, WI, USA). Masson’s trichrome stain kit was purchased from Abcam (Cambridge, MA, USA). The LIVE/DEAD®BacLight™ bacterial viability kit was purchased from Thermo Fisher Scientific (Waltham, MA, USA). All other reagents and solvents were of the highest analytical grade commercially available.
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2

Chitosan-based Phototherapeutic Platform

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Chitosan oligosaccharide (COS), triethylamine (TEA), N-(3-dimethylaminopropyl)-N’-ethylcarbodiimide hydrochloride (EDAC), N-hydroxy succinimide (NHS), and dimethyl sulfoxide (DMSO) were purchased from Tokyo Chemical Industry (TCI) Co., LTD. (Tokyo, Japan). Chlorin e6 (Ce6) was obtained from Frontier Sci. Co. (Logan, UT, USA). Thioketal dicarboxylic acid (ThdCOOH) was purchased from RuixiBiotech Co. Ltd. (Xi’an, China). Hydrogen peroxide (H2O2), phosphotungstic acid, 4-(aminomethyl) phenylboronic acid pinacol ester hydrochloride (PBAP), 2′,7′-dichlorofluorescin diacetate (DCFH-DA), 3-(4,5-dimethyl2-thiazolyl)-2, 5-diphenyl-2H-tetrazolium bromide (MTT), and 2,2,2-tribromoethanol (avertin) were purchased from Sigma Aldrich Chem. Co. (St. Louis, MO, USA). Dialysis membranes with molecular weight cutoffs (MWCO) of 1000 or 2000 Da were purchased from Spectrum Labs., Inc. (Rancho Dominguez, CA, USA). 2,2,2-tribromoethanol (avertin) and tert-amyl alcohol were purchased from Sigma Aldrich Chem. Co. (St. Louis, MO, USA).
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3

Rapid Anesthesia Induction Protocol

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TBE (2,2,2- tribomoethanol 97%, C2H3Br3O, MW 282.8), tert-amyl alcohol (99%) and methyl orange were purchased from Sigma Aldrich, (St. Louis, MO, USA). NaCl was purchased from BDH Chemicals (Palmerston North, New Zealand). HP-β-CD (Kleptose® HPB, MW 1440) was obtained from a gift from Roquette Lestrem, France. CombiTitrant® 5 and methanol (99.8%) were purchased from Merck (Auckland, New Zealand). Atropine was obtained as Phoenix Atropine injection from Provet NZ Ltd (Christchurch, New Zealand). Hematoxylin and eosin dyes for histological examination were obtained from Surgipath Medical (Illinois, USA).
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4

Orthotopic Transplantation of Glioblastoma Cells

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Animal husbandry was performed according to the guidelines of St. Joseph Hospital and Medical Center and Barrow Neurological Institute under the Institutional Animal Care and Use Committee–approved protocol. Five- to six-week-old IcrTac:ICR-Prkdcscid mice were used for in vivo orthotopic transplant of fluorescently-tagged GB3 cells. For orthotopic transplants, 2 μL of dissociated cells at a density of 50,000 cells μL−1 were injected in the right hemisphere (stereotactic coordinates AP 0, ML −2, DV −2.5), as described previously [42 (link), 43 (link)]. 8 weeks after injection, tumor-bearing mice were euthanized with a lethal intraperitoneal injection of 2.5% Avertin (2,2,2-Tribromoethanol, Sigma-Aldrich; T48402; tert-Amyl alcohol, Sigma-Aldrich, A1685). Tissues were fixed through intracardial perfusion with Ringer’s solution (Electron Microscopy Sciences; 11763–10) supplemented with 40 mM NaNO2, 2 mM NaCHO3, and 50 IU mL−1 heparin, followed by ice-cold 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer (PB). Brains were subsequently cryoprotected with incubation in a solution of 30% sucrose in PB for 48 hours before being frozen and cut into 40 μm coronal sections using a cryostat (Microm HM550, Thermo Scientific).
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5

Viral Vector Targeting of Mouse Brain Regions

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5-week-old male mice were anesthetized by intraperitoneal injection of a saline-based 2% Avertin solution (2,2,2-tribromoethyl alcohol dissolved in tert-amyl alcohol [Sigma]), and their heads were fixed in a stereotactic apparatus. Recombinant AAV viruses were injected into the hippocampal CA1 region (coordinates: AP −2.1 mm, ML ± 1.3 mm, and DV −1.8 mm), mPFC (coordinates: AP + 1.8 mm, ML ± 0.4 mm, and DV −2.3 mm), or hippocampal DG (coordinates: AP −2.1 mm, ML ± 1.3 mm, and DV 2.3 mm) with a Nanofil syringe at a flow rate of 100 nl/min (injected volume, 300 nl) using a Nanoliter 2010 Injector (World Precision Instruments). Each injected mouse was restored to its home cage for 3–4 wk and used subsequently for FACS, confocal microscope imaging, electrophysiological recordings, or behavioral analyses.
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6

Saliva Flow Measurement in Mice

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Mice were anesthetized using an intraperitoneal injection of 1.2% Avertin at a dosage of 20 μL per gram body weight. Avertin was prepared by dissolving 2-2-2 tribromoethanol [Sigma, Cat# T48402] in tert-amyl alcohol [Sigma, Cat# 240486] to make a concentrated solution and then dissolved in water to make a 1.25 working solution. Saliva flow was then stimulated using an IP injection of 0.1μg/μL pilocarpine [Sigma, Cat# P6053] at a rate of 5 μL per gram body weight. Saliva flow monitored for ten minutes following pilocarpine injection. Saliva was collected in 20 or 100 μL capillary tubes and measured.
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7

Neurological Disorder Treatment Protocol

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The following chemicals were used: avertin prepared from 99% pure tribromoethanol (A18706; Alfa Aesar, Ward Hill, MA, USA) and tert‐amyl alcohol (Sigma‐Aldrich), phenobarbital sodium (5‐ethyl‐5‐phenyl‐2,4,6‐trioxohexahydropyrimidine sodium salt, P5178; Sigma‐Aldrich), paraformaldehyde diluted from 32% solution (Electron Microscopy Sciences, Hatfield, PA, USA), TRIzol reagent (Life Technologies), chloroform (Sigma‐Aldrich), glycerol (Fisher Scientific, Pittsburgh, PA, USA), ethylene glycol (Fisher Scientific), PBS diluted from 10X stock solution (Mediatech, Inc., Manassas, VA, USA), RIPA buffer (Thermo Fisher Scientific), Complete protease inhibitor cocktail (Roche, Indianapolis, IN, USA), phosphatase inhibitor cocktails 2 and 3 (Sigma‐Aldrich), BSA (Sigma‐Aldrich), TBS diluted from 10X stock solution (Fisher Scientific), Odyssey blocking buffer (Li‐Cor), Tween‐20 (Bio‐Rad, Hercules, CA, USA), and donepezil hydrochloride (4385; Tocris, Minneapolis, MN, USA).
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8

Coagulation Factor Assay Protocol

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Raloxifene (hydrochloride [6-hydroxy-2-(4-hydroxyphenyl)-1-benzothiophen-3-yl]-[4-(2-piperidin-1-ylethoxy) phenyl] methanone), 17ß-estradiol (E2) (1,3,5(10)-estratrien-3,17ß-diol), tert-amyl alcohol, 2,2,2-tribromoethanol, and propylene glycol were purchased from Sigma-Aldrich (St. Louis, MO, USA). Thromboplastin C plus, Actin FS, coagulation factors deficient plasmas (FVII, FX, FXI), bovine thrombin, standard human plasma, veronal, and imidazole buffer solution were purchased from Dade® Behring® (Marburg, Germany). Vacutainer blood collection tubes with buffer sodium citrate and Safety-LokTM collection sets were purchased from Becton, Dickinson, and Co. (Franklin Lakes, NJ, USA).
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9

Murine Asthma Model Protocol

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Sodium chloride, curcumin, methacholine, PBS tablet, glycerol, sodium phosphate dibasic, potassium phosphate monobasic, dexamethasone (DEX), OVA, aluminum hydroxide (ALUM), Tween-20, Tert-amyl alcohol, Wright stain, paraffin wax, 2,2,2-tribromoethanol, periodic acid, Alcian Blue, Schiff reagent, DPX mountant, and eosin and hematoxylin solution were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Formalin, hydrochloric acid, acetic acid, methanol, and ethanol were purchased from Merck (NJ, USA). BD PrecisionGlide Needle 22G, BD OptEIA Mouse IL4, IL-5, IL-13, and IgE ELISA sets were purchased from BD Biosciences Pharmingen (San Diego, CA, USA).
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10

Cardiac Hypertrophy Induction and Tissue Collection

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Cardiac hypertrophy was induced by TAC operation under anesthesia with intraperitoneal injection of avertin, 2-2-2 tribromoethanol (Sigma) dissolved in tert-amyl alcohol (Sigma). The procedure of operation was followed as previously described [11 (link)]. As a control group, sham operation (same procedure except for tying) was done. 1 week or 2 weeks after operation, mice were euthanized by cervical dislocation, and hearts were removed, and then stored in deep freezer at −80°C before protein and RNA extraction.
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