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Debrisoquine

Manufactured by Merck Group
Sourced in United States

Debrisoquine is a laboratory equipment product manufactured by Merck Group. It is used for specific medical and scientific applications. The core function of Debrisoquine is to facilitate research and testing procedures, but a detailed description of its intended use cannot be provided in an unbiased and factual manner.

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11 protocols using debrisoquine

1

Analytical Workflow for Biochemical Profiling

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All solvents, including high purity formic acid (#A117‐50), dichloromethane (#EW‐88016‐02), chloroform (#EW‐80044‐89), acetonitrile (#A955‐4), methanol (#A456‐4), isopropyl alcohol (#A461‐4), and water (#W6‐4) were LC‐MS grade and purchased from Fisher Scientific. Debrisoquine (# D1306100MG) and taurine‐d4 (#703443‐100mg) were purchased from Sigma‐Aldrich.
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2

Plasma Metabolite Extraction for LC-MS

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Liquid chromatography-mass spectrometry (LC-MS)-grade isopropanol, acetonitrile, methanol and water were purchased from Fisher Scientific (New Jersey, USA). Debrisoquine, Pro-Asn, glycoursodeoxycholic acid andmalic acid, 4-nitrobenzoic acid (4-NBA) were products of Sigma (St. Louis, MO, USA). High purity formic acid (99%) was provided by Thermo-Scientific (Rockford, IL). The serum lipid extraction was conducted as described previously [37 (link)]. Briefly, the plasma samples were thawed on ice before being vortexed. For metabolite extraction, 25 μL of plasma sample was mixed with 175 μL of extraction buffer (25% acetonitrile in 40% methanol and 35% water). The sample was then incubated on ice for 10 min before centrifuged again at 14,000 rpm at 4 °C for 20 min. Subsequently, the produced supernatant was transferred to a fresh tube and dried under vacuum. After drying, the dried samples were reconstituted in 200 μL of buffer containing 5% methanol, 1% acetonitrile and 94% water. Fine particles were removed by centrifuge at 13,000 rpm for 20 min at 4 °C. Finally, the supernatant was transferred to a glass vial for ultraperformance liquid chromatography-quadrupole time-of-flight mass spectrometry (UPLC-QTOF-MS) analysis.
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3

Metabolite Identification using LC-MS

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Acetonitrile (ACN), methanol, and water (all LC-MS grade) were purchased from Fisher Scientific (NJ, USA). Debrisoquine, 4-nitrobenzoic acid (4-NBA), and heparin were purchased from Sigma (USA). All standard compounds used for tandem mass spectrometry based validation of metabolite identification were bought from Sigma. Lipid standards were ordered from Avanti Polar Inc. Other reagents for preparation and analyses of samples are described in the respective sections.
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4

Optimized LC-MS Lipid Quantification

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Liquid chromatography–mass spectrometry (LC-MS)-grade acetonitrile, isopropanol, water and methanol were purchased from Fisher Scientific (New Jersey, USA). High purity formic acid (99%) was purchased from Thermo-Scientific (Rockford, IL). Debrisoquine, 4-nitrobenzoic acid (4-NBA), Pro-Asn, glycoursodeoxycholic acid andmalic acid were purchased from Sigma (St. Louis, MO, USA). All lipid standards including 14:0 LPA, 17:0 Ceramide, 12:0 LPC, 18:0 Lyso PI and PC(22:6/0:0) were procured from Avanti Polar Lipids (USA).
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5

Lipidyzer Internal Standards LC-MS Workflow

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All LC-MS grade solvents including acetonitrile and water were purchased from Fisher Optima grade, Fisher Scientific (Pittsburgh, PA, USA). High purity formic acid (99%) LC–MS grade methanol, dichloromethane, and ammonium acetate were purchased from Fisher Scientific and HPLC grade 1-propanol, debrisoquine, and 4-nitrobenzoic acid were purchased from Sigma-Aldrich (Saint Louis, MO, USA). Milli-Q water was obtained from an in-house Ultrapure Water System by EMD Millipore (Billerica, MA, USA). The Lipidyzer isotope-labeled internal standards mixture consisting of 54 isotopes from 13 lipid classes was purchased from SCIEX (Framingham, MA, USA).
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6

Comprehensive Metabolite Profiling by LC/MS

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Liquid chromatography/mass spectrometry (LC/MS)-grade acetonitrile (ACN), water, and methanol were purchased from Fisher Scientific (Pittsburg, PA, USA). High purity formic acid (99%) was purchased from Thermo Scientific (Rockford, IL, USA). Phenylalanine, glutathione, guanosine, adenine, asparatate, 5-hyroxytryptophan, leucyl-leucine, uridine, dethiobiotin, oxidized glutathione, glycyl-leucine, S-ATPA, PGE2, 17-hydroxyprogesterone, creatinine, pyruvate, debrisoquine, 4-nitrobenzoic acid (4-NBA) were purchased from Sigma Aldrich (St. Louis, MO, USA). All the reagents and chemicals used were LC/MS grade.
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7

Comprehensive Chemical Standards for LC Analysis

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For sample extraction and LC analysis we used Fisher OptimaTM grade solvents (Fisher Scientific, Hanover Park, IL). The chemical standards were purchased from Cayman Chemical Company (stachydrine hydrochloride [i.e., proline betaine]) (Ann Arbor, MI) or Sigma-Aldrich (debrisoquine, chlorpropamide, 4-nitrobenzoic acid, Nε,Nε,Nε-trimethyllysine hydrochloride [TML], L-carnitine, cis-aconitic acid, citric acid, N1-acetylspermidine dihydrochloride, N-acetyl-L-arginine, creatine, niacinamide, 3-methyl-L-histidine, betaine hydrochloride, L-pipecolic acid, indole-3-acetic acid, and indoxyl sulfate) (St. Louis, MO). The hexosamine-valine-isoleucine-OH (Hex-V-I) was synthesized by Expert Synthesis Solutions (London, ON, Canada) with details previously provided [27 (link)]. Quality control reference materials were obtained from the National Institute of Standards and Technology (NIST) (NIST Standard Reference Material 3667 [creatinine in frozen human urine] and NIST Standard Reference Material 1950 [metabolites in frozen human plasma]).
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8

Lipid Standards for LC-MS Analysis

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All LC-MS grade solvents, including acetonitrile and water, were purchased from Fisher Optima grade, Fisher Scientific. High-purity formic acid (99%) was purchased from Thermo-Scientific. Debrisoquine and 4-nitrobenzoic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). EquiSPLASH® LIPIDOMIX®, 15:0-18:1-d7-PA, C15 Ceramide-d7 (d18:1-d7/15:0) and 18:1 Chol (D7) ester were purchased from Avanti Polar Lipids (Alabaster, AL, USA). Internal standards for free fatty acid (FFA), dihydroceramides (DCER), hexosylceramides (HCER), and lactosylceramides (LCER) were purchased from Sciex (Framingham, MA, USA) as Lipidyzer platform kit.
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9

Comprehensive Lipidomics Analysis Protocol

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All LC-MS grade solvents including acetonitrile and water were purchased from Fisher Optima grade, Fisher Scientific. High purity formic acid (99%) was purchased from Thermo-Scientific. Debrisoquine and 4-nitrobenzoic acid were purchased from Sigma-Aldrich. EquiSPLASH® LIPIDOMIX® quantitative mass spec internal standard and 15:0-18:1-d7-PA, C15 Ceramide-d7 (d18:1-d7/15:0) and 18:1 Chol (D7) ester were purchased from Avanti polar lipids. Internal standard for free fatty acid (FFA), dihydroceramides (DCER), hexosylceramides (HCER), lactosylceramides (LCER) were purchased from Sciex as Lipidyzer platform kit. The LC-MS data acquisition details are provided in Supplementary data.
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10

Reagent Preparation for Mass Spectrometry

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Reagents and chemicals for mass spectrometry: All LC-MS grade solvents including chloroform, ACN, water and methanol were purchased from Fisher Optima grade, Fisher Scientific (Hampton, NJ, USA). High purity formic acid (99%) was purchased from Thermo-Scientific (Rockford, IL, USA). Ammonium formate, debrisoquine and 4-nitrobenzoic acid (4-NBA) were purchased from Sigma-Aldrich (St. Louis, MO, USA). TGFβ, 9-cis retinoic acid and all trans-retinoic acid were purchased from R&D systems. Internal standards for all trans retinoic acid (D5) and adenosine (D2) were purchased from Cambridge Isotope Laboratories and standards. Acetyl CoA was purchased from Cayman Chemical Company (Ann Arbor, MI, USA).
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