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4 protocols using cd19 af700

1

Transwell Assay for Analyzing Immune Cell Interactions

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Transwell plates (HTS Transwell®-96 Permeable Support with 5.0 µm Pore Polycarbonate Membrane, Corning, Corning, NY, USA) were used. Supernatants of long-term treated NK cells were collected 24 h after medium exchange. Then, 235 µL of the supernatants was added to the lower chamber and 0.25 × 106 of freshly isolated PBMCs and granulocytes in 80 µL were added onto the insert. After 5 h of incubation (37 °C, 5% CO2), plates were incubated for 10 min at 4 °C, performed to induce detachment of monocytes. Cells were then removed from the lower chamber, transferred to a v-well plate, and pelleted by centrifugation. In the next step, cells were resuspended in 50 µL FACS-buffer containing an antibody mix of CD3 PerCP (1:100; Clone:SK7, BioLegend), CD56 BV421 (1:50; Clone:NCAM16.2; BD Biosciences), CD14 FITC (1:50 Clone: 61D3; Santa Cruz Biotechnology, Dallas, TX, USA), CD19 AF700 (1:50; Clone:HIB19; BioLegend), CD66b APC (1:200; Clone:G10F5; BioLegend) and CD11c PE (1:100; Clone: B-ly6; BD BioSciences) transferred to TruCount tubes (BD BioSciences) and incubated for 20 min at RT in the dark. Measurement of cells was performed using the BD LSRFortessa. Data were analyzed using FlowJo software (FlowJo) and absolute cell counts were calculated according to the manufacturer’s instructions.
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2

Immunophenotyping of Immune Cells

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Cells analysed were isolated from MLN, spleen or ileum. For staining cell numbers were adjusted to 1 × 106 cells/well. Cells were stained with IgM-APC-Cy7 (1:1000; Biolegend, San Diego, CA, USA), CD19-AF700 (1:1000; Biolegend), B220-VioBlue (1:500, Miltenyi Biotec GmbH, Bergisch Gladbach, Germany), granzyme B-FITC (1:100; eBioscience, San Diego, CA, USA), CD8-PE-Cy7 (1:3000; Biolegend) or CD3-APC-Cy7 (1:1000; Biolegend) antibody. For all dilutions MACS buffer was used. Cells were analysed in the Gallious Flow Cytometer (Beckman Coulter).
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3

Profiling Interferon Signaling in Down Syndrome

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Phospho-STAT1 staining: Whole blood from individuals with DS and healthy controls were subject to Ficoll gradient to collect the mononuclear cell layer (PBMC) and frozen. For direct stimulation, thawed PBMCs were incubated in complete RPMI overnight, washed, stained with live-dead in PBS for 10 min at 37°C, and finally were stimulated for 15 min with indicated amounts of IFNα2b. For staining, cells were washed 2 times with 0.5% BSA and surface-stained on ice for 30 minutes (CD16-AF647, CD14-AF488, CD3-BV510, CD19-AF700, CD56-BV711, all from Biolegend) followed by fixation/permeabilization in 90% ice-cold methanol and staining with PE anti-phospho-STAT1 Y701 (1:25, BD).
IFNAR1 and IFNAR2 staining: hTERT-immortalized fibroblasts were scraped off in 5mM EDTA, washed, and stained with live-dead in PBS for 30 min on ice. They were then washed and stained with anti-IFNAR1 (clone AA3, courtesy of Sandra Pellegrini in Supplemental Fig 1A and clone MARI-5A3 from Millipore Sigma for Supplemental Fig 3A) or anti-IFNAR2 (PBL) for 2 hours on ice. The cells were washed and stained with biotin-conjugated rat anti-mouse IgG (H+L) (Thermo Fisher) for 40 min on ice, followed by PE-conjugated Streptavidin for 10 min on ice.
Flow cytometry was acquired on a Cytek Aurora or BD LSR Fortessa, and data were analyzed with Cytobank (https://www.cytobank.org/).
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4

Comprehensive Immune Cell Phenotyping

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PBMC (1–4×106 cells/tube) were stained with monoclonal antibodies to B cell markers (CD19-AF700, IgM-PerCP-Cy5.5, IgD-PE-Cy7 (Biolegend), CD38-FITC, CD21-PE, CD10-PE-CF594, CD40-APC, CD86-BV421 (BD Pharmingen)) and T cell markers (CD3-AF700, CD4PacBlue (Biolegend), CD8-APC-AF750 (Invitrogen), CD45RA-ECD, CD27-PE-Cy5 (Beckman Coulter), CD27-BV650, CD38-FITC, HLA-DR-PE-Cy7, PD-1-APC, CXCR5-PE (R&D Systems)) for 40 minutes at room temperature. Stained cells were subsequently washed twice and fixed in 1% paraformaldehyde for 10 minutes at 4°C. Data was acquired within 4 hours using a BD LSRII flow cytometer (BD Biosciences – Immunocytometry Systems, San Jose, CA). Data were analyzed using Flow Jo Software (Tree Star Inc., Ashland, OR) with the gating scheme as per Supplemental Figure 1.
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