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5 protocols using ab129067

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Kidney Fibrosis Immunohistochemistry Protocol

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Staining was performed on 2-μm-thick paraffin kidney sections that were pretreated with a heat-based antigen retrieval approach. The primary antibodies used were Col3a (Abcam, #ab-6310), LOX (Abcam, #ab-60178), α-SMA (a specific marker of myofibroblasts) (Abcam, #ab-7817), Pan Cytokeratin (a specific marker of epithelial cell) (Abcam, #ab-7753) and CTR1 (Abcam, #ab-129067). The sections were incubated with the primary antibodies at 4 °C for 1–2 nights, followed by incubation with biotin-labeled secondary antibodies and horseradish peroxidase (HRP)-labeled tertiary antibodies (DAKO). The sections were developed using a 3,3′-diaminobenzidine (DAB) kit (Vector, #SK4100), counterstained with hematoxylin, dehydrated, and examined under a light microscope. For colocalization immunofluorescence staining, the slides were incubated with Alexa Fluor conjugated secondary antibody (Invitrogen, #Alexa Fluor 568-A11011, Alexa Fluor 488- A11029) for 2 h at room temperature. Zeiss confocal microscope was used to observe the labeled slides.
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2

Western Blot Analysis of CTR1 and PARP

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Protein electrophoresis of whole cell lysates and transfer onto PVDF membrane was performed as previously described [45 (link)]. Membranes were incubated with 10% skim milk powder in TBST (10 mM Tris, pH 8.0, 150 mM NaCl, 0.5% Tween 20) for 60 min, prior to washing once with TBST and incubating with antibodies against CTR1 [46 (link)] (rabbit anti-SLC31A1, ab129067, Abcam, Melbourne, VIC, Australia), PARP (rabbit anti-PARP antibody 9542, Cell Signaling Technology, Danvers MA, USA), or GAPDH (mouse anti-GAPDH, Abcam, Cambridge, UK). Membranes were washed and incubated with anti-rabbit or anti-mouse dilution of horseradish peroxidase-conjugated anti-antibody for 60 min. Blots were developed with Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare Life Sciences, Rydalmere, Australia) and analysed using QuanityOne (Version 4.6.9, Bio-Rad, Gladesville, Australia). Both CTR1 and PARP protein expression were normalized to that of the housekeeping protein GAPDH.
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Quantifying CTR1 Protein Expression

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Total protein was extracted by cell lysis buffer supplemented with protease inhibitor. Protein samples were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and electrotransferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk in TBS-T, membranes were incubated with the primary antibody (#ab129067, CTR1, Abcam, San Francisco, CA, USA). Protein was detected with Image Acquisition using ImageQuant LAS 4000 (Pittsburg, PA, USA).
For immunofluorescence assays, cells were cultured on glass slides with cell abundance of 30% in 6-well polystyrene microplates. The cells on glass slides were fixed with 4% formaldehyde and then permeabilized with PBS containing 0.2% Triton X-100 after washing three times in PBST. After blocking with 1% BSA in PBS, the cells were incubated with primary antibody (#sc-66847, CTR1, Santa Cruz, CA, USA) overnight at 4 °C. Cells were washed three times in PBS, followed by incubation with 2 μg/mL Alexa Fluor 594 phalloidin (Invitrogen, Carlsbad, CA, USA) for 1 h at room temperature. Cells were washed with PBS three times, nuclear stained with 5 μg/mL DAPI, and analyzed with a confocal laser scanning microscope (Olympus FluoView FV1000 confocal microscope, Melville, NY, USA).
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4

Protein Expression Analysis by Western Blot

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Total proteins were extracted from cells using lysis buffer supplemented with the complete protease inhibitor cocktail (Abcam). The following primary antibodies were used for Western blot analysis: anti‐PTBP1 (ab133734, Abcam), anti‐SLC31A1 (ab129067, Abcam), anti‐Cleaved Parp antibody (ab32064, Abcam), anti‐Cleaved Caspase‐3 antibody (ab2302, Abcam), anti‐Bax antibody (ab32503, Abcam), anti‐Bcl‐2 antibody (ab32124, Abcam) and anti‐β‐actin antibody (ab8226, Abcam). The detailed steps of the assay have been described in our previous paper.33 Briefly, the protein concentration was determined by BCA method, and then, total protein lysates were fractionated using SDS‐PAGE and transferred onto PVDF membranes. Membranes were blocked with 5% non‐fat milk and incubated with the above primary antibodies. Horseradish peroxidase‐conjugated secondary antibody was used to develop blots. The grey value was measured by ImageJ software.
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5

Immunoblotting Characterization of Protein Expression

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Immunoblotting assays were performed in accordance with standard procedures. Briefly, cell lysates were separated by 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Millipore). The membranes were probed with antibodies against ZNF711 (1:100, LifeSpan BioSciences, LS‑C109806), SLC31A1 (1:200, Abcam, ab129067), JHDM2A (1:100, Abcam, ab191389) and EHMT2 (1:1000, Abcam, ab185050), overnight at 4°C, and then incubated with indicated horseradish peroxidase–conjugated secondary antibodies (PIERCE, 31430) for 1 h at room temperature. The blotting membranes were stripped and re-probed with an anti-α-Tubulin antibody (1:1000, Abcam, ab7291) or anti-GAPDH antibody (1:1000, Abcam, ab8245).
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