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Bis tris gel

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Bis-Tris gel is a type of polyacrylamide gel used for protein electrophoresis. It is a buffered gel system that provides a stable and consistent pH environment for the separation of proteins based on their molecular weight. The Bis-Tris gel is designed to offer good resolution and reproducible results for a wide range of protein samples.

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22 protocols using bis tris gel

1

Western Blot Protocol for Protein Analysis

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Cells plated in 12-well plates were washed with ice-cold HBSS, lysed directly in ice-cold 1× Lithium Dodecyl Sulfate sample buffer (Thermo Fisher Scientific) supplemented with cOmplete Protease Inhibitor cocktail (Roche), and boiled immediately at 99°C for 10 min. Protein quantitation per sample was obtained using the Pierce BCA protein assay kit (Thermo Fisher Scientific). DTT (Sigma-Aldrich) was then added to each sample at a final concentration of 100 mM before gel loading. 10–20 μg of cell lysate per sample was loaded into 4–12% Bis-Tris gels (GenScript) and separated in MES or MOPs buffer (GenScript). Separated proteins were then transferred onto 0.45 µm nitrocellulose (BioRad) or 0.45 µm polyvinylidene difluoride (Thermo Fisher Scientific) membranes in Towbin’s buffer. Membranes were blocked in 5% milk in 1× PBS supplemented with Tween-20 at RT for 1 h before primary antibody incubation in 3% BSA (Tocris) in PBS supplemented with Tween-20 at 4°C overnight. Membranes were washed and then incubated in appropriate HRP secondaries (Cell Signaling) for 1 h at RT before signal development in Amersham ECL (GE Healthcare) or SuperSignal West Femto ECL (Thermo Fisher Scientific). ECL signal was detected using a ChemiDoc Imaging System (BioRad) and analyzed using the ImageLab (BioRad) software.
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2

Immunoblotting of Lipid Metabolism Proteins

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For immunoblotting, 50 mg mouse liver samples were homogenized in RIPA buffer (Beyotime, China) with a protease inhibitor cocktail (Roche) using a TissueLyzer (Jingxin, China). Homogenates were precleared by centrifugation at 10000× g for 10 min at 4 °C. Protein concentrations were determined using BCA assay (Pierce). Equal amounts of proteins (20-30 mg) were loaded and separated on 4%-12% Bis-Tris gels (GenScript) and transferred to PVDF membranes using iBlot® 2 Dry Blotting System (Thermo Fisher Scientific). The blots were then probed with the following antibodies: Anti-ACC (1:1000, Cell Signaling Technology), anti-PPARγ (1:1000, Proteintech), anti-SCD1 (1:500, Abcam), anti-SREBP-1c (1:1000, Proteintech), anti-FASN (1:1000, Proteintech), anti-β-actin (1:5000, Proteintech), anti-mouse IgG (1:5000, Jackson ImmunoResearch), anti-rabbit IgG (1:5000, Jacson ImmunoResearch), and then detected by ClarityTM Western Substrate (Bio-Rad). Band intensities were analyzed using ImageJ.
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3

Proteinase K Digestion of α-Synuclein Fibrils

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WT1a or G51D α-syn PFFs were prepared by sonication at 20% power for 15 times (1 s per time, 1 s per interval) on ice by JY92-IIN sonicator. α-Syn PFFs (3 mg ml−1, 25 μl, in PBS, pH 7.4) were incubated with proteinase K (final concentration 0.5 and 1.5 μg ml−1, Invitrogen) at 37 °C for 10, 30, 60 and 200 min. 1 mM PMSF was added to samples to stop the reaction. Then samples were boiled with an SDS-loading buffer for 15 min and loaded on 4–20% Bis–Tris gels (GenScript). The gels were stained by Coomassie brilliant blue and images were recorded and analyzed with Image Lab 3.0 (Bio-Rad). Graphing was performed with GraphPad Prism 6. The data shown in are mean ± s.d., n = 3 independent samples.
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4

Protein Separation and Western Blotting

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Proteins were separated by electrophoresis using 10% or 4–12% Bis-Tris gels (GenScript) and subsequently stained using Pierce Silver Stain Kit (Thermo Fisher) or used for Western blotting. Protein transfer to nitrocellulose membranes was done using standard procedures. Membranes were blocked with TBST buffer (Tris-buffered saline, pH 7.4, with 0.05% Tween-20 containing 5% (w/v) non-fat dry milk) for 1 h at room temperature; primary antibody was incubated overnight at 4 °C and secondary antibody for 1 h at room temperature. Membranes were developed with SuperSignal West Pico chemiluminescent substrate (Thermo Fisher) and visualized by autoradiography.
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5

Proteinase K Digestion of α-Synuclein Fibrils

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α-Syn fibrils were concentrated by centrifugation (14,462× g, 25 °C, 45 min), washed and resuspended with PBS, followed by sonication at 20% power for 15 times (1 s per time, 1 s interval) on ice by JY92-IIN sonicator. α-Syn PFFs (3 mg ml−1, 25 μl, in PBS, PH 7.4) were incubated with proteinase K (final concentration 0.5, 1, 1.5, 2, 2.5 μg ml−1, Invitrogen) at 37 °C for 30 min. Reaction was terminated by adding 1 mM PMSF. The samples were boiled with SDS-loading buffer for 15 min and loaded on 4–20% Bis-Tris gels (GenScript). The gels were stained by Coomassie brilliant blue and images were recorded and analyzed with Image Lab 3.0 (Bio-Rad).
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6

Quantitative Protein Analysis Protocol

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As in our previous research,11 (link),13 (link) total proteins were extracted using whole-cell and tissue lysis assay (KeyGen). Protein quantification using a BCA assay (Beyotime) was performed according to the manufacturer's instructions. Total proteins were resolved on 4–20% Bis-Tris gels (GenScript, China) and transferred by electroblotting onto nitrocellulose membranes (Pall). The membranes were blocked with 5% nonfat dry milk in TBST for 1.5 h and incubated overnight at 4°C with primary antibodies (Table 2). After washing with TBST, the membranes were incubated for 1 h with secondary antibodies (ab6721, 1:5000; Abcam) diluted in 5% BSA/TBST at room temperature. Super Signal West FEMO Chemiluminescent Substrate (Thermo Scientific) was used for detection. The protein expression level was determined by densitometric analysis and normalized to the level of vinculin.
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7

Protein Characterization and Antitoxin Assay

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SDS-PAGE was performed with 4–20 % bis-Tris gels (Genscript) followed by protein staining/destaining. sEC-HPLC was performed using a Waters Alliance system and a Sepax sEC-150 column (3μ particle size, 7.8 × 300), equilibrated with PBS + 0.02 % sodium azide and run at 1 mL/min. Detection was at 280 nm. Primary amine concentrations were determined using trinitrobenzene sulfonic acid (TNBS) [29 (link)]. Lf assay was performed at the National Institute for Biological Standards and Control (United Kingdom), using the 3rd International Standard tetanus toxoid for use in flocculation test as the reference standard and 66/021 Equine tetanus antitoxin as the flocculation antibody.
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8

Immunoblotting Analysis of POLQ Variants

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A portion of 293T cells from the MMEJ reporter assays performed after overexpression of POLQWT or POLQ-DY2230AA polymerase mutant was used for western blotting analysis. Cells were resuspended in IP lysis buffer (Cat. No: 87787, Thermo scientific, USA) and laemmli buffer was used to make whole-cell protein extracts. Equal amounts (20 μg) whole-cell protein lysates were separated on 4–20% bis tris gels (GenScript) by electrophoresis then transferred onto Protran BA85 nitrocellulose membrane (Whatman, Germany) and immunoblotted with antibodies against Actin (MA-5-11869,1:20000, Invitrogen) or POLQ (PA5-69577,1:500, Invitrogen) overnight followed by secondary antibodies IRDye 800CW (926-32210, 1:10000) or IRDye 680CW (926-68073, 1:10000). Blots were scanned using ODYSSEY software.
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9

Optimized Protein Extraction and Detection Workflow

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The cells were washed using an ice-cold phosphate-buffered saline (PBS) and then lysed with the Membrane and Cytosol Protein Extraction Kit (20127ES60 Yeasen, China). The kit was further supplemented with protease (20124ES03 Yeasen, China) and phosphatase inhibitors (20109ES05 Yeasen, China). The concentration of the proteins was determined via the BCA Protein Assay Kit (20201ES76 Yeasen, China), and the process was conducted in accordance with the manufacturer’s instructions. The proteins were segregated on 4–20% Bis-Tris gels (Genscript, China), subsequently being transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore ISEQ00010, China). The membranes were then blocked using 5% non-fat milk in Tris-buffered saline with Tween 20 (TBST) at room temperature for 1 hour. Primary antibodies were diluted in 0.5% non-fat milk in TBST and were then allowed to incubate with the membrane at 4°C overnight: Anti-LTBR antibody (Absin abs146148, 1:1,000), Anti-GAPDH (Absin abs830030, 1:2,000). After three washes with TBST, the membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (34201ES60 Yeasen, China) in TBST at room temperature for 1 hour. The immunoreactive bands were then visualized utilizing the Enhanced Chemiluminescence (ECL) Western Blotting Substrate (36208ES60 Yeasen, China).
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10

Protein Characterization and Antitoxin Assay

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SDS-PAGE was performed with 4–20 % bis-Tris gels (Genscript) followed by protein staining/destaining. sEC-HPLC was performed using a Waters Alliance system and a Sepax sEC-150 column (3μ particle size, 7.8 × 300), equilibrated with PBS + 0.02 % sodium azide and run at 1 mL/min. Detection was at 280 nm. Primary amine concentrations were determined using trinitrobenzene sulfonic acid (TNBS) [29 (link)]. Lf assay was performed at the National Institute for Biological Standards and Control (United Kingdom), using the 3rd International Standard tetanus toxoid for use in flocculation test as the reference standard and 66/021 Equine tetanus antitoxin as the flocculation antibody.
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