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7 protocols using be0102

1

Western Blot Analysis of Protein Samples

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Tissue or cell samples were homogenized in ice-cold lysis buffer (Beyotime) containing protease inhibitors (Roche Diagnostics, Basel, Switzerland) and then centrifuged at 4 °C, 12,000×g to remove fat layers and debris. Protein concentration was determined by a BCA protein assay kit (Beyotime). The proteins were denatured by boiling at 95 °C in Laemmi loading buffer (Yeasen, Jiangsu, China) for 5 min. The proteins were separated by SDS-PAGE, transferred onto cellulose acetate membranes or PVDF membranes, and immunoblotted for target proteins. Blots were developed with super sensitive ECL substrate (Beyotime) using a chemiluminescent imager (Tanon 5200, Shanghai, China). The antibodies are listed as follows: anti-FTH (1:1000, Abcam, Cambridge, UK, ab65080), anti-HIF1α (1:500, Santa Cruz Biotech, Dallas, TX, USA, sc-13515), anti-β-actin (1:10,000, Abbkine, Wuhan, China, ABL01010), anti-β-tubulin (1:10,000, Abbkine, ABL01030), anti-mouse secondary antibody (1:10,000, Easybio, Beijing, China, BE0102), anti-rabbit secondary antibody (1:10,000, Easybio, BE0101).
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2

Western Blot Analysis of Cell Signaling

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Whole-cell lysates were separated by 10% SDS-PAGE and transferred to a polyvinylidene difluoride membrane by electroblotting. After blocking with 5% fat-free milk, the membranes were incubated at 4°C overnight with the following primary antibodies: anti-CEBPβ (1:1,000, ab32358; Abcam), β-Actin (1:1,000, ac026; ABclonal Technology), phospho-p44/42 MAPK (Erk1/2; Thr202/Tyr204) rabbit mAb (1:1,000, 4370; CST), Phospho-p38 MAPK (Thr180/Tyr182) rabbit mAb (1:1,000, 9215; CST), Phospho-NF-κB p65 (Ser536) rabbit mAb (1:1,000, 3033; CST), RBPSU XP rabbit mAb (1:1,000, 5313; CST), and STAT3 mouse mAb (1:1,000, 9139; CST). The membranes were then washed and incubated with goat anti-rabbit IgG (H&L)-HRP conjugated antibody (1:10,000, BE0101; EASYBIO) or goat anti-mouse IgG antibody (1:10,000, BE0102; EASYBIO). Proteins were visualized with SuperSignal West Pico Chemiluminescent Substrate (34080; Thermo Scientific).
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3

Western Blot Analysis of CHD8, SLC6A19, and SLC7A8

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Tissues were homogenized in lysis buffer (P0013B, Beyotime, Haimen, China) containing protease inhibitor cocktail (P0013B, Beyotime, Haimen, China). The homogenates were centrifuged (4 °C, 15871 rcf, 20 min), and the supernatant was collected. Approximately 20 μg of proteins was loaded on a Tris-glycine gel. Proteins were transferred onto PVDF membranes, blocked, and stained overnight using the following primary antibodies: anti-CHD8 (1:1000, ab114126, Abcam), HRP-conjugated anti-GAPDH (1:5000, BE0034, Easybio, Beijing, China), anti-SLC6A19 (1:5000, ab180516, Abcam), and anti-SLC7A8 (1:5000, ab75610, Abcam). Membranes were washed and stained with HRP-conjugated secondary antibodies (1:5000, BE0101 and BE0102, Easybio, Beijing, China) before washing and development with enhanced chemiluminescence (ECL) substrate for Western blotting (BE6706, Easybio, Beijing, China).
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4

Western Blot Analysis of HA-Tagged Proteins

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Whole adults were homogenized in ice-cold RIPA buffer (P0013B, Beyotime) supplemented with 100 μM protease inhibitors PMSF (ST506, Beyotime). Total protein concentrations were measured using the BCA assay Kit (P0012S, Beyotime). Protein samples were diluted to equal concentrations using lysis buffer and loaded into SDS-PAGE gels for Western blot analysis. The primary antibodies were HA-Tag (C29F4) rabbit mAb (1:8000, #3724, Cell Signaling) and mouse monoclonal anti-α-tubulin (1:50,000, Sigma, T6074). The secondary antibodies were goat anti-rabbit IgG H&L (HRP) (1:20,000, ab205718, Abcam, Cambridge, UK) and goat anti-mouse IgG (H + L), HRP (1:20,000, BE0102, Easybio, Beijing, China).
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5

Protein Extraction and Immunoblotting

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Total protein was extracted with protein extraction buffer (50 mM Tris-HCl pH 7.4, 154 mM NaCl, 10% glycerol, 5 mM MgCl2, 1% Triton X-100, 0.3% NP-40, 5 mM DTT, 1 mM PMSF, and protease inhibitor cocktail). Anti-FLAG (Sigma, F1804), anti-GFP (ABclonal, AE012), anti-HA (Beyotime, AF5057), anti-plant-actin (ABclonal, AC009), anti-RPOB (PhytoAB, PHY1701), anti-PetA (PhytoAB, PHY0023), anti-RbcL (Agrisera, AS03037A), anti-PsaA (PhytoAB, PHY0053A), and anti-IDH (PhytoAB, PHY0098A) were used as primary antibodies, and goat anti-mouse (EASYBIO, BE0102) or goat anti-rabbit antibodies (EASYBIO, BE0101) were used as secondary antibodies.
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6

Protein Extraction and Western Blot Analysis

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Plant samples were ground in liquid nitrogen, and total proteins were isolated by extraction buffer [0.2 M NaCl, 5 mM MgCl2, 5 mM DTT, 20 mM tris-HCl (pH 7.5), 0.03% Tween 20 (Ameresco), and 0.5 tablets of protease inhibitor (Roche)]. The supernatant was collected by centrifuging at 12,000 rpm for 15 min. Total proteins were examined by Western blot analysis using α-tubulin (1:5000; EASYBIO, BE0031) as a loading control.
Proteins in the study were also probed with α-RH12 (1:2000; GenScript, GTGRGAPPNPDYHQC), α-SE (1:2000; Agrisera, AS09532A), α-HYL1 (1:2000; Agrisera, AS06136), α-GFP (1:2000; EASYBIO, BE2001), α-FLAG (1:2000; Sigma-Aldrich, F7425), α-HA (1:2000; EASYBIO, BE7002), α-TuMV-VPg (1:200; GenScript, KGKSKGRTRGIGHKC), α-TuMV-CP (1:5000; GenScript, AGETLDAGLTDEQKC), α-TuMV-HC-Pro (1:2000), α-CMV-CP (1:3000), and α-MEMB12 (1:2000) (23 (link)). Secondary antibodies were goat anti-rabbit IgG (1:5000; EASYBIO, BE0101) and goat anti-mouse IgG (1:5000; EASYBIO, BE0102).
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7

Western Blot Analysis of Brain Samples

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The brain samples
were homogenized in RIPA lysis buffer (Solarbio,
R0010) containing protease inhibitor tablets (4693159001, Roche) using
an automatic bead-based homogenizer (SAIERTE, China). The protein
was collected from the supernatant after centrifugation at 12,000
rpm for 15 min, the protein concentration was determined using the
BCA protein assay kit (Thermo Fisher Scientific), and proteins were
resolved on 10% SDS/PAGE gels. After transfer to 0.45 μm PVDF
membranes, the membranes were blocked for 1 h in blocking buffer and
then incubated overnight at 4 °C with the primary antibody (CD11b:
ab133357, Abcam; β-tubulin: A01030, Abbkine) in the same buffer.
The blots were then washed in TBS-T (TBS buffer containing 0.1% Tween-20),
incubated for 1 h with secondary antibodies (Goat Anti-Rabbit IgG
(H&L)-HRP: BE0101, EASYBIO; Goat Anti-Mouse IgG (H&L)-HRP:
BE0102, EASYBIO), and detected using a Tanon 5200 imaging system.
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