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4 protocols using anti cenpf

1

Protein Expression Analysis via Western Blot

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Cells or tumors were lysed in ice-cold lysis buffer containing 100 mM Tris-HCl (pH 6.8), 4% sodium dodecyl sulfate (SDS), 20% glycerol, 2% hydroxyethanal, and clarified by centrifugation at 15000 rpm for 15 min. Equal amounts of cell lysate protein (20 μg of protein per lane) were subjected to SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to polyvinyl difluoride (PVDF) membranes (0.45 μm; Millipore, Bedford, MA). For immunoblot analysis, the membranes were probed with specific primary antibodies, anti-CENPF (Abcam, Cambridge, MA), anti-cyclinD1 (Abcam, Cambridge, MA), anti-c-Myc (Abcam, Cambridge, MA), anti-CDK2 (Cell Signaling Technology, Beverly, MA), anti-CDK4 (Cell Signaling Technology, Beverly, MA), anti-CDK6 (Cell Signaling Technology, Beverly, MA), and anti-β-actin antibody (Cell Signaling Technology, Beverly, MA), and secondary antibodies conjugated to HRP (ZhongShan JinQiao, Beijing, China). Immunocomplexes on the membrane were visualized using Image Quant LAS 4000 (GE Healthcare, Tokyo, Japan) with Immobilon® Western HRP Substrate luminol reagent and peroxide solution (Millipore).
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2

Profiling Pancreatic Cancer Biomarkers

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Tissue microarray chips containing 99 samples of pancreatic cancer and 71 samples of paired normal pancreatic tissue were purchased from Outdo Biotech (Shanghai, China). The characteristics of the patients are shown in Supplementary File S1. Immunohistochemistry (IHC) staining was performed as previously described [23 (link)]. Microarray chips were stained with anti-CENPF (Abcam), anti-SCEL, anti- GLUT-1, anti-SLC6A14, anti-TMC7 (Thermofisher, Waltham, MA USA), anti-TMPRSS4 and anti- MASpin (Gene Tex, Irvine, CA, USA) antibodies. Control staining with only secondary antibodies was performed to ensure specificity. Rabbit IgG polyclonal-Isotype control (Abcam) was used as the negative control. The score for staining was independently assessed by two experienced pathologists based on the integrated staining intensity and the proportion of positive cells. The final score was determined by adding the staining intensity score and the average proportion of positive cells score; the final score ranged from 0 to 7. For the purpose of further analysis, the samples with a score of 0–3 were defined as low expression, while the samples with scores of 4–7 were defined as high expression.
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3

Quantifying DNA Damage Response in Cells

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Cells were grown in 24-well plates (Greiner SensoPlate) until confluent and then treated for 30 min with 50 µM etoposide or irradiated with γ-irradiation (2 Gy). After treatment, cells were rinsed with PBS and replenished with fresh media or fixed for 10 min in PBS containing 4% paraformaldehyde at the indicated time points. Following fixation, cells were permeabilised (20 min, 0.2% Triton X-100 in PBS), blocked (1 h in PBS-5% BSA), and incubated with anti-γH2AX (Millipore, 05–636, 1:2500) and anti-CENP-F (Abcam, ab5, 1:2500) antibodies for 3 h in PBS containing 5% BSA. Cells were then washed (3 × 5 min in PBS containing 0.1% Tween-20), incubated for 1 h with the corresponding Alexa Fluor conjugated secondary antibody (1:1000, 5% BSA), and washed again as described earlier. Finally, cells were counterstained with DAPI (Sigma, Gillingham, UK) and imaged on Opera Phenix microscope (PerkinElmer) with 40X water immersion objectives. Image analysis and evaluation was done using Harmony High-Content Imaging and analysis software. Cells were gated to the G1 population according to the CENPF signal.
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4

Cell Cycle Regulation Protein Antibodies

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The detailed procedure was described
in our previous study.54 (link),55 (link),58 (link),59 (link) Primary antibodies, anti-CENPA, anti-CENPE,
anti-CENPF, and anti-CENPI antibodies, were purchased from abcam (Cambridge,
U.K.); anti-CDK1 and anticyclin B1 antibodies were purchased from
Santa Cruz Biotechnology, Inc. (Dallas, TX); and anti-EZH2 and anti-H3K27me3 antibodies were purchased from GeneTex International Corporation
(HsinChu, Taiwan), anti-Caspase-3 was purchased from GeneTex International
Corporation; anti-cleaved Caspase-3 was purchased from Cell Signaling
Technology (Danvers, Massachusetts).
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