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5 protocols using gat 3

1

Cerebellum Protein Expression Analysis

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The animals were sacrificed by decapitation and the cerebellums were dissected and homogenized in 66 mM Tris–HCl (pH 7.4), 1 % SDS, 1 mM EGTA, 10 % glycerol, 1 mM sodium ortho-vanadate, and 1 mM sodium fluoride containing protease inhibitor cocktail (Roche, Mannheim, Germany). Samples were subjected to electrophoresis and immunoblotting as in Felipo et al. [42 (link)]. Primary antibodies were against IL-4, IL-10, iba-1, Ym-1, and GAT 3 (1:2000) from Abcam (Cambridge, UK); IL-1β (1:500) from R&D SYSTEMS (Minneapolis, USA); Arg-1 from BD Bioscience (NJ, USA); and glial fibrillary acidic protein (GFAP) (1:5000) from Sigma (St. Louis, MO, USA). As a control for protein loading, the same membranes were also incubated with anti-actin (Abcam, Cambridge, MA; 1:1000). Secondary antibodies were anti-rabbit, anti-goat, or anti-mouse IgG (1:2000) conjugated with alkaline phosphatase (Sigma, St. Louis, MO). The images were captured using the ScanJet 5300C (Hewlett- Packard, Amsterdam, the Netherlands) and band intensities quantified using the Alpha Imager 2200, version 3.1.2 (AlphaInnotech Corporation, San Francisco).
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2

Golexanolone Effects on Cerebral Markers

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After five weeks of golexanolone treatment, cerebellum and hippocampus were dissected from six rats per group and homogenized in 50 mM TRIS–HCl pH 7.5, 50 mM NaCl, 10 mM EGTA, 5 mM EDTA and protease and phosphatase inhibitors. Thirty μg of protein was loaded in a 15% SDS gel and immunoblot was performed with antibodies against: GFAP (Sigma, 1:5000), IBA1 (Abcam, 1:500), CCL2 (Proteintech, 1:200), TNF‐a (R&D SYSTEMS, 1:500), Glutaminase (Novus, 1:1000), GAT‐3 (Abcam, 1:1000), TrkB (Abcam, 1:500), GAD67 (Abcam, 1:500) and GABAA beta3 subunit (Abcam, 1:1000). β‐Actin (Abcam, 1:5000) or GAPDH (Millipore, 1:15,000) were used as a control for protein loading. For plasma proteins analyzed by Western blot we used Coomassie R‐350 staining on the membrane, after immunoblotting,35 as loading control. We selected a Coomassie‐stained band that was not saturated as representative of the whole protein lane. For quantification, intensity of plasma proteins was divided by intensity of complete protein lane, as is performed in Ref. [35 (link)].
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3

Quantifying Surface Protein Expression

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This was analyzed as in Ref. [36 ]. Transversal 400 μm thick cerebellar slices were added to tubes containing ice‐cold Krebs buffer with or without 2 mM BS3 (Pierce, Rockford, IL) and incubated for 30 min at 4°C. Cross‐linking was terminated by adding 100 mM glycine (10 min, 4°C). The slices were homogenized in lysis buffer (66 mM Tris–HCl pH 7.4. 1% SDS, 1 mM EGTA, 10% glycerol, 0.2 mg/ml leupeptin, 1 mM NaF, 1 mM Na‐orto‐vanadate) by sonication for 20 s. Samples treated with or without BS3 were analyzed by Western blot using antibodies against TNFR1 (Abcam, 1:1000), P2X4 (Invitrogen, 1:500), TrkB (Abcam, 1:500), KCC2 (Millipore, 1:1000) and GAT‐3 (Abcam, 1:1000). The surface expression of these proteins was calculated as the difference between the intensity of the bands without BS3 (total protein) and with BS3 (non‐membrane protein).37
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Cerebellar Protein Expression Analysis

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The membrane expression of proteins in cerebellar slices was analyzed with cross-linking with BS3 (Pierce cat. no. 21580, Rockford, IL, USA), as described by Cabrera-Pastor et al. [77 (link)] After the treatments (see above), slices were added to tubes containing ice-cold Krebs buffer with or without 2 mM BS3 and incubated for 30 min at 4 °C with gentle shacking. Cross-linking was terminated by quenching the reaction with 100 mM glycine (10 min, 4 °C). The slices were homogenized by sonication for 20 s. Samples treated or not with BS3 were analyzed with Western blot, as described above, using antibodies GAT1 (1:500), GAT3 (1:500), GABAγ2 (1:500), GABAβ3 (1:500) from Abcam, and GABAα2 (1:1000) from BIOSS Antibodies. The membrane surface expression of each subunit was calculated as the difference between the intensity of the bands without BS3 (total protein) and with BS3 (nonmembrane protein).
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5

Immunohistochemistry of Neural Markers

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Coronal 30-μm sections were cut on a cryostat and stored at 4 °C in PB with 0.1 % azide until further processing. Free-floating sections were washed, endogenous peroxidase activity was quenched with 3 % H2O2 for 15 min, and sequential incubations with blocking serum (normal goat serum or horse serum) and primary antibodies (overnight 4 °C) were performed. For double immunofluorescence, corresponding antibodies were incubated together. Primary antibodies were against IL-4, IL-10, iba-1, and GAT 3 from Abcam (Cambridge, UK); IL-1β from R&D SYSTEMS (Minneapolis, USA); and glial fibrillary acidic protein (GFAP) (1:5000) from Sigma (St. Louis, MO). Incubation with biotinylated secondary antibodies and with avidin-biotin-HRP complex (ABC kit, Vector, CA, USA) followed. The stained sections were mounted on slides, dehydrated, and coverslipped. For immunofluorescence, secondary antibodies (Alexa fluor, 647 or 488; Invitrogen) were used, and DAPI was used to visualize cell nuclei.
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