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3 protocols using mouse anti ha 12ca5

1

Plasmid and Antibody Protocol for Cell Signaling

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The following plasmids, antibodies and oligos were used: rabbit anti-HA (6908, Sigma-Aldrich, St. Louis, MO, USA), mouse anti-HA(12CA5) (sc-57592, Santa Cruz Biotechnology, Santa Cruz, CA, USA), mouse anti-GFP (G1546, Sigma-Aldrich, St. Louis), mouse anti-GAPDH (G8140, US Biological, Salem, MA, USA), mouse anti-ORF59 (gift from Dr. Bala Chandran), rabbit anti-control IgG (sc-2027, Santa Cruz Biotechnology), mouse anti-control IgG (sc-2025, Santa Cruz Biotechnology), rabbit anti-JMJD3 (3457S, Cell Signaling Technology, Danvers, MA, USA), rabbit anti-UTX (33510S, Cell Signaling Technology), control LacZ oligo (Protein and Nucleic Acid Facility, Stanford University), and PAN oligos (Protein and Nucleic Acid Facility, Stanford University). Plasmids pCS2-UTX-Flag and pCS2-JMJD3-Flag were purchased from Addgene.
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2

Imaging Subcellular Localization of Proteins

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Preparation of COS-7 cells transfected with plasmid DNA, and confocal microscopic analysis with LSM Pascal (Zeiss) were performed as described [10 (link)]. Immunostaining was performed using mouse anti-Myc 9E10, mouse anti-HA 12CA5, rabbit anti-HA Y-11 (Santa Cruz), mouse anti-pan lamin (X67, X167, X233) (Abcam) and anti-Nup153 QE5 (Abcam) antibodies as primary antibody and Alexa Fluor 488-, Alexa Fluor 555-, and Alexa 546-conjugated antibodies (Molecular Probes) as secondary antibody. Nuclei were stained with SytoxGreen (Molecular Probes). For co-immunostaining with lamin, transfected cells are fixed in methanol at -20 °C.
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3

Yeast Protein Co-Immunoprecipitation Protocol

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Yeast strains were grown to mid-log phase in SD-His medium, treated, or not, with 20 mM 3-AT for 30 min, collected by filtration, and frozen in liquid nitrogen. Cells were disrupted in lysis buffer (50 mM Tris-HCl [pH 7.5], 150 mM NaCl, 50 mM NaF, 5 mM EDTA, 0.1% NP-40, 60 mM b-glycerophosphate, 1 3 PIC, and 1 3 Pefabloc) using a FastPrep-24TM, and the lysates were then clarified by centrifugation (3 0 220 3 g for 5 min at 4 C). Co-immunoprecipitation was performed with 10 mg of total protein using Pierce TM Anti-HA magnetic beads (Thermo Scientific). eIF2 subunits were detected using specific rabbit antisera (Perzlmaier et al., 2013) . For HA-tag and c-Myc-tag detection, mouse anti-HA 12CA5 or anti-c-Myc 9E10 (Santa Cruz Biotechnology) antibodies were used, respectively. Sui2-Ser 52 phosphorylation was monitored in whole cell lysates prepared as described (Hatakeyama and De Virgilio, 2019) using phospho-EIF2S1 (Ser 52 ) polyclonal antibody (Invitrogen). The list of primary and secondary antibodies with indicated working dilutions can be found in the Key resources table. ECL Western Blotting Detection (GE Healthcare) or Radiance Plus Sensitive ECL (Azure Biosystems) were used for the western blot development. The blots were quantified using ImageJ (NIH).
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