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One step tb green primescript rt pcr kit

Manufactured by Takara Bio
Sourced in Japan, China, United States

The One Step TB Green PrimeScript RT-PCR Kit is a reagent kit designed for reverse transcription and real-time PCR amplification of RNA targets. It combines reverse transcription and PCR amplification in a single reaction. The kit utilizes TB Green dye for detection of amplified products.

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65 protocols using one step tb green primescript rt pcr kit

1

Quantitative Analysis of HIF-1α and VEGF

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After indicated treatment, total RNA in cells at logarithmic growth was extracted with Trizol reagent. After the purity and concentration of RNA were detected, the RNA was reversely transcribed into cDNA using the PrimeScript™ RT Master Mix (Takara). qPCR was subsequently performed according to the instructions of the One Step TB Green® PrimeScript™ RT-PCR Kit (Takara). The following primer sequences were used for the qPCR: HIF-1α forward, 5'-TGAAGTGTACCCTACCCTAACTAGCCG-3' and reverse, 5'-AATCAGCACCAAGCAGGTCATAG-3'; VEGF forward, 5'-GTCACTATG CAGATCATGCGGA-3' and reverse, 5'-GTCACTATGCAGATCATGCGGA-3'; GAPDH forward, 5'-AAGAGGGATGCTGCCCTTAC-3' and reverse, 5'-TACGGCCAAATCCGTTCACA-3'. The expression of HIF-1α and VEGF was analyzed by 2−∆∆Ct method normalized to endogenous control of GAPDH [34 (link)].
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2

Quantifying RNA Expression Changes

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Total RNA was extracted by using Sepasol-RNA I Super G (Nacalai Tesque). qRT-PCR reactions were carried out by using a One Step TB Green PrimeScript RT-PCR Kit (Takara), the appropriate primer set (Supplementary Table S1), and a StepOnePlus Real Time PCR System (Thermo Fisher Scientific). Unlike the standard procedure based on a reference gene, total RNA samples prepared from the same number of cells were subjected to qRT-PCR and compared directly, because there were no genes that were not affected by RPB6 knockdown.
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3

Quantification of PTGS2 mRNA in HBE cells

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After intermittent hypoxia treatment, RT-qPCR was used to detect the mRNA of PTGS2 in HBE cells, and GAPDH was used as an endogenous reference. According to the manufacturer’s instructions, total RNA was isolated from HBE cells using the RNA Isolation Kit (9108, Takara). The mRNA expression of PTGS2 was determined using the One Step TB Green PrimeScript RT‒PCR kit (RR096A, TaKaRa, Japan). Real-time PCR analysis was performed using SYBR Master Mix on a Bio-Rad Connect Real-Time PCR platform (Bio-Rad, United States). Thermal cycling conditions: 1. Reverse transcription reaction, 42°C for 5 min, 95°C for 10 s 2. PCR, 95°C for 5 s, 60°C for 30 s, repeat: 40 times. The RT‒qPCR primer sequences are listed in Table 1. Target gene expression was determined using the 2−ΔΔCT method (Livak and Schmittgen, 2001 (link)).
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4

Quantification of miR-190b and FOXP2 Expression

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Total RNA was extracted from cultured cells using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. miR-190b expression levels were detected using an ABI 7500 (Applied Biosystems Thermo Fisher Scientific, Inc.) using One Step TB Green® PrimeScript™ RT-PCR Kit (Takara Bio, Inc.) after transcribing the extracted RNA into complementary DNA (cDNA) using MMLV Reverse Transcriptase First Strand cDNA Synthesis kit (Invitrogen; Thermo Fisher Scientific, Inc.) at 37°C for 15 min, 85°C for 5s, and 4°C for 60 min. The sequences of the primers used were as follows: miR-190b forward, 5′-GGGTGATATGTTTGATAT-3′ and reverse, 5′-CAGTGCGTGTCGTGGAGT-3′; U6 small nuclear RNA forward, 5′-CTCGCTTCGGCAGCACA-3′ and reverse, 5′-AACGCTTCACGAATTTGCGT-3′; FOXP2 forward, 5′-AACAACAGCAGGCTCTCCAG-3′ and reverse, 5′-GGCACCTGCAGTGGTCTC-3′; and GAPDH forward, 5′-GGTGGTCTCCTCTGACTTCAACA-3′ and reverse, 5′-GTTGCTGTAGCCAAATTCGTTGT-3′. Expression levels of miR-190b or FOXP2 were calculated using the 2−∆∆Cq method with U6 snRNA or GAPDH as endogenous controls (11 (link)). Experiments were performed in triplicate. The thermocycling conditions were as follows: Initial denaturation at 95°C for 30s, followed by 40 cycles of 95°C for 10s and 56°C for 30s.
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5

Quantitative Expression Analysis of MIR100HG

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Total RNAs from tissue samples and cell lines were extracted by TRIzol reagent (Invitrogen, Carlsbad, CA, U.S.A.). According to the manufacturer’s guide, PrimeScript RT Master Mix (Takara, Dalian, China) was utilized for reverse transcription. Then, quantitative real-time PCR (qRT-PCR) analysis was conducted by One Step TB Green PrimeScript RT-PCR Kit (Takara, Dalian, China) at an ABI 7500 real-time PCR System (Applied Biosystems, Foster City, CA, U.S.A.). The primer sequence details were as follows: MIR100HG forward, 5’-GGCGACATCAGACAGACAGA-3’ and reverse, 5’-AGGACCAGCTGAAAGGAACA-3’; β-actin forward, 5’-AAAGACCTGTACGCCAACAC-3’ and reverse, 5’-GTCATACTCCTGCTTGCTGAT-3’. β-actin was taken as an internal control. MIR100HG and β-actin were amplified in different wells and run in triplicate.
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6

Gene Expression Analysis by RT-qPCR

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Gene primer sequences were designed using Primer-BLAST of the National Center for Biotechnology Information [110 (link)]. RNA was extracted using the TRIzol method. Reverse transcription and PCR amplification were performed using the One Step TB Green PrimeScript RT-PCR Kit (Takara). RT-qPCR was performed on LightCycler 96 (Roche, Basel, Switzerland), a real-time PCR system. Use NormFinder software (version 5, Aarhus University Hospital, Skejby, Denmark) to select the most stable gene pairs from the 6 genes as reference genes for RTqPCR assay [111 (link)]. The primer amplification efficiency was calculated by establishing a standard curve. Use the geometric mean of two carefully selected reference genes (GAPDH and MRPL39) as an accurate normalization factor [112 (link)]. Relative gene expression calculated by the modified Pfaffl method [8 (link),113 (link)]. The sequences and amplification efficiencies of the gene primers are provided in Table S1.
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7

Quantitative RT-PCR of Gene Expression

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Total RNA was isolated with Trizol reagent (Invitrogen, Carlsbad, CA, USA). cDNA was synthesized using PrimeScript™ RT Master Mix (Takara, Tokyo, Japan). Quantitative real-time PCR was carried out using the One Step TB Green™ PrimeScript™ RT-PCR Kit (Takara, Tokyo, Japan) according to manufacturer’s instructions (Table 1). The 2−ΔΔCt method was used to calculate the relative expression level by normalizing to β-Actin levels (Zhao et al., 2019 (link)).
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8

Quantifying Viral Loads in Infected Tissues

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Animal tissues were weighed and homogenized at 5 days of post-infection. Tissue homogenates were clarified by centrifugation at 10,000 rpm for 5 min and stored at −80 °C. RNA was extracted using TRIzol Reagent (Thermo Fisher Scientific, USA) according to the manufacturer’s protocol. Quantification viral genomic copies was performed using One Step TB Green™ PrimeScript™ RT-PCR Kit (TaKaRa, Japan) on Applied Biosystems QuantStudio (Thermo Fisher Scientific, USA). Each sample was measured in triplicate. Primers used for qRT-PCR were: 5′-TCGTTTCGGAAGAGACAGGT-3′ (forward primer) and 5′-GCGCAGTAAGGATGGCTAGT-3′ (reverse primer). Viral loads were calculated as the viral genomic copies in one gram tissue.
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9

Quantitative Analysis of RNA Expression

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The total RNAs were extracted from nephroblastoma tissues or cells with TRIzol reagent (Invitrogen, Carlsbad, CA, U.S.A.) according to the manufacturer’s instruction. Then, total RNAs were used for template to reverse-transcribed into cDNAs using PrimeScript RT Master Mix (Takara Biomedical Technology, Beijing, China). The quantitative real-time PCR (qRT-PCR) was conducted with One Step TB Green PrimeScript RT-PCR Kit (Takara Biomedical Technology, Beijing, China) at ABI PRISM 7000 Sequence Detection System (Applied Biosystems, Foster City, CA, U.S.A.) following the manufacturer’s protocols. Gene expression was normalized to GAPDH.
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10

Quantitative RT-PCR Analysis of HepG2 Cells

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HepG2 cells were washed with 1 × PBS and total RNA was extracted using an Accuprep® universal RNA extraction kit (Bioneer, Daejeon, Republic of Korea). Extracted RNA was quantified using a NanoDrop 2000 (Thermo Fisher Scientific). Next, 1 μg of RNA was subjected to qRT-PCR on a 7500 Fast Real-Time PCR system (Applied Biosystems, Waltham, MA, USA) using a One-Step TB Green® PrimeScript RT-PCR Kit (Takara, Japan). The conditions were 42 °C for 50 s, 95 °C for 10 s, followed by 40 cycles of 95 °C for 5 s, 55 or 58 °C for 30 s, and 72 °C for 30 s. The primers used for qRT-PCR analysis are listed in Table 1. The mRNA levels of the target gene in the same sample were normalized to that of β-actin, a housekeeping gene. Data were expressed as relative fold change in transcript levels relative to controls using the 2−ΔΔCT equation.
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