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34 protocols using dulbecco modified eagle medium (dmem)

1

Isolation and Characterization of Rat Bone Marrow-Derived Mesenchymal Stem Cells

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BMSCs were isolated according to a previously described method [13 (link)]. Briefly, an approximately 50g S-D rat was euthanized by pentobarbital overdose. Both femurs were removed, and the muscles were cleaned under sterile conditions. The bone marrow was flushed out with Dulbecco's modified Eagle's medium (DMEM; Beyotime, Shanghai, China), and the resulting DMEM/bone marrow mixture was centrifuged. After discarding the supernatant, the sediment was resuspended in complete medium, comprising DMEM, 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (Beyotime, Shanghai, China). The cells were then cultured in an incubator(5%CO2, 37°C, 95% humidity). After 3 days, the non-adherent cells were removed, and the medium was refreshed every 2 days until the cells reached 90–100% confluence. The cells were then passaged, and after the 3rd passage, the cell phenotype was verified as described in our previous study [3 (link)]. These cells were found to meet the criteria for mesenchymal stem/stromal cells [35 (link)].
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2

Oxidative Stress Induction in Human Trabecular Meshwork Cells

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HTMCs were purchased from Sciencell Research Laboratories (San Diego, CA, USA). According to the product information, HTMCs were isolated from the juxtacanalicular and corneoscleral regions of human eyes, and characterized by immunofluorescence methods using α-smooth muscle actin- and fibronectin-specific antibodies. Cells were cultured in a humidified incubator at 37°C with 5% CO2 using Dulbecco's modified Eagle's medium (DMEM; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) supplied with 10% fetal bovine serum (Gibco; Thermo Fisher Scientific, Inc.) and 1% penicillin-streptomycin solution (Gibco; Thermo Fisher Scientific, Inc.). Oxidative stress was induced by treating HTMCs with DMEM that contained 300 µM H2O2 (Beyotime Institute of Biotechnology, Shanghai, China) for 3–7 h. Then, the cells were harvested for future analysis.
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3

Cell Culture and Transfection Protocols

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SV-HUC-1, T24, 5637, J82, and RT4 were purchased from the Cancer Institute of the Chinese Academy of Medical Sciences (Beijing, China). Cells were cultured in complete RPMI 1640 or DMEM supplemented with 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin (Beyotime, Shanghai, China).
The siRNAs compounds targeting CTSE (siCTSE-1: 5’- CAACUACUUGGAUAUGGAAUA- 3’; siCTSE-2: 5’ – CAAUCUUUCUCCAUUCAGUAU – 3’) were designed by GenePharma (Suzhou, China). Transfection was performed using lipofectamine 3000 (Invitrogen) following the manufacturer’s instructions. Overexpression plasmid pcDNA3.1-POU5F1 and corresponding empty vector were purchased from Obio Technology Corp.
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4

Investigating BCR-ABL Signaling in K562 Cells

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The K562 cell line was bought from the American Type Culture Collection (ATCC). The MTT kit (3-(4,5-dimethyl-2-thiazolyl)-2, 5-diphenyl-2-H-tetrazolium bromide) was purchased from Beijing Dingguo Science and Technology Co., LTD. BCR-ABL plasmid was from the plasmid library in our laboratory. BCR-ABL, β-actin primary antibody, and HRP-tagged IgG secondary antibody were bought from Beijing Dingguo Science and Technology Co., LTD. DMEM and fetal bovine serum were from Beyotime. Caspase-3 activity detection kit and apoptosis detection reagent FITC-Annexin-V (used for detecting phosphatidylserine eversion) were from Beijing Dingguo Science and Technology Co., LTD. MiRNA143 and scramble miRNA were designed and synthesized by Genepharma.
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5

Cell Cycle Regulation Protocol

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DMEM, trypsin-EDTA solution, paraformaldehyde, Triton-X 100, Hoechst33258 and 2,5-diphenyltetrazolium bromide (MTT) were purchased from Beyotime Biotechnology (Beijing, China). Cell cycle detection kit and BrdU cell proliferation detection kit was purchased from KeyGEN BioTECH. Fetal bovine serum was purchased from Gbico (USA). Lipfectamine 2000 Reagent was obtained from Invitrogen (Thermo Fisher Scientific, US); Reverse Transcription Kit and SYBR Premix ExTaqTMII Kit were purchased from TaKaRa (Dalian, China). SanPrep EndoFree Plasmid Kits, antibody of CDK1, CDK2, CDC25A, CDC25C, CCNB1, PLK1, Wee1, p-CDK1 (phospho Tyr15) and GAPDH and PCR primers were obtained from Shangon Biotech (Shanghai, China). Monoclonal mouse antibody p-CCNB1 (phospho Ser147), p-CDC25C (phospho Ser216), anti-rabbit IgG-conjugated Alexa 594 antibody and anti-His-tag antibody were obtained from Proteintech Company (Wuhan, China).
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6

Culturing Bladder Cancer Cell Lines

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The present study employed human bladder cancer cells (5637, UMUC-3, and T24), along with normal human uroepithelial cells (SVHUC). Roswell Park Memorial Institute-1640 medium (RPMI-1640; Procell Life Science & Technology, Wuhan, China) was used to culture 5637 and T24 cells, and Dulbecco’s Modified Eagle’s Medium (DMEM; Procell Life Science & Technology, City, US State abbrev. if applicable, Country) was used to culture UMUC-3 and SVHUC cells. The China Center for Type Culture Collection (CCTCC, No: GDC078; Wuhan, China) provided all of the cells. The cell cultures were grown within a cell incubator including 5% CO2 under the condition of 37 °C using RPMI-1640 medium and DMEM that contained 1% penicillin-streptomycin (ST551; Beyotime, Wuhan, China), as well as 10% fetal bovine serum (FBS; Ausbian Corporation, Australia).
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7

Evaluating Cardioprotective Effects of DXXK

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H9c2 cardiomyoblasts were cultured in DMEM containing 10% (v/v) FBS and 1% penicillin–streptomycin at 37 °C in a moist incubator with 5% CO2. The cells were subcultured when cell density was about 80–90% and divided into control group, DOX group, DXXK 800 ng/mL group, DXXK 400 ng/mL group and DXXK 200 ng/mL group. The DOX group was given DOX 4 μ mol/mL for 24H; the DXXK groups were given DOX 4 μ mol/mL + DXXK 800 ng/mL, DOX 4 μ mol/mL + DXXK 400 ng/mL and DOX 4 μ mol/mL + DXXK 200 ng/mL, respectively. H9c2 rat cardiomyocytes were purchased from GIBCO; THERMO FISHER SCIENTIFIC, INC.; FBS (Beyotime, Shanghai, China), penicillin–streptomycin (Beyotime, Shanghai, China) and DMEM (Beyotime, Shanghai, China).
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8

Breast Cancer Cell Migration and Invasion

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To test the migration ability of breast cancer cells, suspensions of MCF7 and MDA-MB-231 cells were prepared in DMEM without FBS at a density of 2 × 104 cells/mL. The upper chamber of the Transwell was filled with 100 μL of this suspension, while the lower chamber was filled with 500 μL of DMEM containing FBS. The excess cells were retrieved with a sterile cotton swab, fixed in 4% formaldehyde, and stained with 0.1% crystal violet to count the number of migrating cells.
To investigate the invasiveness of MCF7 and MDA-MB-231 cells, the stroma was diluted in DMEM without FBS at a ratio of 1:7 (Beyotime, Guangzhou, China). An aliquot of 50 μL was aspirated into the upper chamber and allowed to rest for 3–4 h. The rest of the procedure was the same as that described for the migration assay.
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9

Novel Flavonoid Derivative GL-V9 Evaluation

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GL-V9 (C24H27NO5,(5-hydroxy-8-methoxy-2-phenyl-7-(4-(pyrrolidin-1-yl) butoxy)4H-chromen-4-one), MW 409.47, purity 99%) is a new flavonoid derivative and synthesize by Prof. Zhiyu Li in our lab [25] (link). GL-V9 was dissolved in dimethyl sulfoxide (DMSO, Sigma-Aldrich, St. Louis, MO, USA), made into the parent solution with the concentration of 0.1 M, and then stored at − 80 °C. The final concentration is 2.5, 5, 10, 15 and 20 μM, diluted in Dulbecco's modified Eagle medium (DMEM; GIBCO, Carlsbad, CA, USA).
Paclitaxel injection was purchased from Haikou Pharmaceutical Factory. Dorsomorphin Dihydrochloride (Compound C, C24H27ClN5O, MW 472.41 and purity 99.73%) was purchased from MedChem Express and dissolved in DMSO to 5 mM. N-acetyl-L-cysteine, which was from Beyotime Biotechnology, was dissolved in water to 0.5 M and was diluted with DMEM to its final concentration. Etomoxir (C15H18ClNaO4, MW 320.74 and purity 98.63%) was from MedChem Express and dissolved in water to 10 mM. Dehydroepiandrosterone (DHEA, C19H28O2, MW 288.42) was from Solarbio Life Sciences and dissolved in DMSO to 1 M.
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10

Culturing and Transfecting Human ESCC Cell Lines

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Human ESCC lines Eca-109 and TE-10 (Chinese Academy of Sciences in Shanghai, Shanghai, China) were highly differentiated squamous cell carcinoma lines. The cells were cultured in DMEM (Beyotime, Shanghai, China) containing 100 mg/ml streptomycin/penicillin, 10% fetal bovine serum (FBS), and 100 U/ml penicillin in an incubator with 5% CO2 at 37°C. IL-32 interference and overexpression lentivirus (Genechem Company, Shanghai, China) were purchased for transfection. After stable transfection, the cells were subcultured and prepared for follow-up experiments.
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