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62 protocols using emd millipore

1

Immunohistochemical Analysis of Snail and N-Cadherin

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Tissues were fixed in 10% neutral-buffered formalin, processed and embedded in paraffin. Tissue sections were deparaffinized and rehydrated in an ethanol series. Sections were blocked for nonspecific binding with 1% normal serum (Thermo Fisher Scientific, Inc.) and incubated with the primary anti-Snail (ab53519; diluted at 1:500; Abcam) and anti-N cadherin (PA5-19486; diluted at 1:300; Thermo Fisher Scientific, Inc.) antibodies overnight at 4°C. Subsequently, immunostaining was developed using 3,3′-diaminobenzidine (Vector Laboratories, Inc., Burlingame, CA, USA) followed by hematoxylin counterstaining (Sigma-Aldrich; EMD Millipore). Immunostaining was visualized using a fluorescence microscope (Eclipse 80i Fluorescence Microscope; Nikon Corporation).
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2

Glutamate-Induced Retinal Explant Dynamics

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The explants were divided into glutamate (glu), α-MSH + glutamate (α-MSH + glu), and normal control (normal) groups (n = 20/group). At 4 DIV, α-MSH + glu group was pre-incubated with 0.1 μM α-MSH (Calbiochem in EMD Millipore, Billerica, MA, USA, Supplementary Table S2) for 30 min, then glu and α-MSH + glu groups were stimulated with 100 μM L-glutamic acid monosodium salt hydrate (MSG, Sigma-Aldrich, St. Louis, MO, USA, Supplementary Table S2). The explants maintained in plain culture media subserved the normal controls. The explants were processed for paraffin sections at 24 and 48 h after MSG stimulation.
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3

Cytokine and Hormone Blood Levels

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TNF-α, leptin and ghrelin blood levels were measured in batch using the EMD Millipore (now Merck Millipore) at the end of the study to prevent lot-to-lot variability. All blood samples were transported immediately to the laboratory in a prepared ice-packed container and then centrifuged and stored at −80°C until analysis.
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4

High-Throughput Screening Compound Library

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The compound library used for high-throughput screening contained 34144 compounds. 21824 derived scaffolds from the World Drug Index (WDI) of which 16544 were chosen based on diversity, 5280 with an emphasis on solubility and 4576 carboxylate/ketone and amine fragments.
4224 compounds were obtained from the ARTCHEM-library (ART-CHEM GmbH, Berlin, Germany) and 4312 compounds were donated to the FMP-Berlin by academic researchers. Compounds were dissolved in DMSO and diluted 1:1 in acetonitril/water to a final concentration of 25 μM and filtered before use. Purity was determined according to the UV absorbance at 254 nm using LC-MS. Compounds for manual validation were obtained from Sigma-Aldrich, EMD Millipore or purchased via MolPort at the highest available purity and diluted in DMSO (Sigma-Aldrich Chemie GmbH, Munich, Germany).
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5

Western Blot Analysis of EMT Markers

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Cells were lysed using the mammalian protein extraction reagent, radioimmunoprecipitation assay buffer (Beyotime Institute of Biotechnology, Haimen, China), supplemented with a protease inhibitor cocktail (Roche Diagnostics, Basel, Switzerland) and PMSF (Roche Diagnostics). Proteins were separated by 10% SDS-PAGE (Sigma-Aldrich; EMD Millipore). Specific monoclonal antibodies against SATB1 (1:1,000, cat. no. ab92307, Abcam), vimentin (1:1,000, cat. no. ab92547, Abcam), E-cadherin (1:1,000, cat. no. ab11512, Abcam Inc.) and β-actin (1:5,000, cat. no. ab8227, Abcam) were applied for overnight incubation at 37°C. The secondary antibody was horseradish peroxidase-conjugated goat anti-rabbit IgG (1:2,000; cat. no. sc-2030, Santa Cruz Biotechnology, Inc., Dallas, TX, USA). An ECL chromogenic substrate was used to visualize the bands and the intensity of the bands was quantified by densitometry (Quantity One software; Bio-Rad Laboratories, Inc., Hercules, CA, USA).
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6

Transwell Assay for Cell Invasion

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Cell invasion was examined using a 24-well Transwell chamber (8 mm pore size; Corning, Inc.) pre-coated with Matrigel for 1-h at room temperature (EMD Millipore; Merck KGaA). Transfected HT29 and SW480 cells (50,000 cells/well) were seeded in 300 µl serum-free DMEM to the upper chamber. A total of 500 µl DMEM containing 20% FBS was added into the bottom chamber. Following incubation at 37°C for 24 h, cells on the insert were carefully removed with a cotton-tipped swab. The cells that had invaded through the membrane were stained with 0.5% crystal violet at room temperature for 10 min and photographed under an inverted microscope (magnification, ×200).
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7

Cationic Liposome Preparation for In Vivo Use

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Cationic liposome was prepared as multilamellar vesicles for in vivo use as described previously (24 (link)). Briefly, 1,2 dioleoyl-3-trimethylammonium-propoane (Avanti Polar Lipids, Inc. Alabaster, AL, USA) and cholesterol (Sigma-Aldrich; EMD Millipore) were mixed in a 1:1 molar ratio, dehydrated in round-bottom tubes using a freeze dryer (SCIENTZ-50ND; Scientz Biotechnology Co., Ltd., Ningbo, China), then rehydrated in 5% glucose solution by heating at 50°C for 6 h. For the in vivo injection, plasmid DNA/lipoplexes were prepared immediately prior to injection by gently mixing cationic liposome with plasmid DNA at a ratio of 12.5 µg total cationic liposome to 2.5 µg plasmid DNA, resulting in a final concentration of 12.5 µg plasmid DNA per ml in a sterile solution of 5% glucose in water.
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8

Protein Extraction and Analysis of BMSCs

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Total protein was extracted from BMSCs using ice-cold RIPA lysis buffer supplemented with 1 mM phenyl methane sulfonyl fluoride (Beyotime Institute of Biotechnology). Total protein was quantified using the Enhanced BCA Protein Assay kit (cat. no. P0006; Beyotime Institute of Biotechnology) and 40 µg protein/lane was separated by SDS-PAGE on 8-12% gel. The separated proteins were transferred onto a polyvinylidene fluoride membrane (EMD Millipore; Millipore Sigma) and blocked with 5% skimmed milk for 15 min at room temperature. Membranes were incubated with rabbit anti-α-SMA, anti-TGF-β1, anti-SMAD3 and GAPDH (1:1,000; cat. nos. AF0048, AF0297, AF1501 and AF1186, respectively; Beyotime Institute of Biotechnology) primary antibodies at 4˚C overnight. Following primary incubation, membranes were incubated with the horseradish peroxidase-conjugated goat anti-rabbit IgG (1:3,000; cat. no. SA00001-2, Proteintech Group, Inc.) secondary antibody at room temperature for 2 h. The bands were visualized using Millipore Immobilon ECL (Cat. No. WBKLS0100, Millipore Sigma). Protein expression was quantified using Scion Image (version 1.8.0; Scion Corporation) with GAPDH as the loading control.
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9

Quiescent Cell Tracking Using Microfluidics

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We utilized a CellASIC ONIX microfluidic profusion platform and accompanying microfluidic plates to track particles in quiescent cells (EMD Millipore, a division of Merck KGaA, Darmstadt, Germany). Quiescence was established by allowing cells to grow within the same SCD media for 7 days (Laporte et al., 2011 (link)). Seven-day-old media, collected from the culture by centrifuging 1mL of cells and harvesting the supernatant, was used as perfusion media in the microfluidic plate at a rate of 2 psi.
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10

Cell Proliferation Assay Using MTS

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The cells were harvested and a single cell suspension was prepared with H-DMEM, at a density of 1×103-1×104 cells/well. The cells were seeded into 96-well plates, with 200 µl in each well and the edge well filled with sterile phosphate-buffered saline (PBS). The cells which were divided into 5 groups and cultured at 37°C and 5% CO2 for 24, 48 or 72 h. A total of 20 µl MTS (Sigma-Aldrich; EMD Millipore, Billerica, MA, USA) was then added to each well, and the culture was terminated subsequent to 4 h and agitated for 10 min to fully dissolve the crystals. The absorbance of each well was measured at 490 nm and the inhibition rate was calculated. Cell growth inhibition rate (%)=1-cell survival rate OR=(1-absorbance of the experimental group at 490 nm/absorbance of the control group at 490 nm) ×100.
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