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Favorprep blood genomic dna extraction mini kit

Manufactured by Favorgen Biotech

The FavorPrep Blood Genomic DNA Extraction Mini Kit is a laboratory equipment product designed to extract genomic DNA from blood samples. It provides a simple and efficient method for DNA extraction, suitable for various downstream applications.

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14 protocols using favorprep blood genomic dna extraction mini kit

1

Whole Blood DNA Extraction Protocol

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DNA was extracted from 200 µl of whole blood using FavorPrep Blood Genomic DNA Extraction Mini Kit (Favorgen Biotech Corp.) according to the manufacturer’s protocol. Briefly, 20 µl proteinase K and 200 µl FABG buffer were added to the samples, which were then mixed and incubated at 60°C for 15 min to lyse the cells. The tube was centrifuged to remove drops on the cap and then 200 µl absolute ethanol was added to the sample. After mixing thoroughly using pulse-vortexing for 10 s and briefly spinning the tube to remove drops, the mixture was placed in a FABG Mini Column, washed, and eluted for DNA solution.
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2

Blood Sample Collection and DNA Extraction

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Blood samples (3 mL) were collected by a phlebotomist through the puncture of veins from 202 T2DM patients and 75 controls in sterile tubes containing ethylenediaminetetraacetic acid (EDTA)-Na2. Collected blood samples were transferred into two separate micro-centrifuge tubes. One tube was stored at –20°C for genomic DNA extraction and another one was centrifuged at 12,000 rpm for 12 min for isolation of blood plasma. The clear supernatant layer of plasma was transferred into a new autoclaved micro-centrifuge tube for further analyses. Genomic DNA was extracted from the blood samples by using FavorPrep Blood Genomic DNA Extraction Mini Kit (Favorgen Biotech Corp., Taiwan).
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3

Mycoplasma Genus Species Identification via PCR

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Genomic DNA was extracted from 200 µL of the blood samples using FavorPrep™ Blood Genomic DNA Extraction Mini Kit (Favorgen, Pingtung, Taiwan) according to the manufacturer's instruction and stored at -20 ºC until further analysis.
The conventional PCR (cPCR) assays were performed by universal Mycoplasma spp. primers targeting the partial sequence of the 16 S rRNA gene [51] . Subsequently, identification of CMhm, Mhf, and CMt in PCRpositive samples was performed using a panel of three species-specific primers in cPCR [22] . PCR reactions were performed in a 25 µL volume reaction mixture containing 12.5 µL of Taq DNA Polymerase 2X Mastermix (Ampliqon, Odense, Denmark), 2 µl of the template DNA, 1 µL of 10 pmol of each forward and reverse primer (synthesized by metabion international AG, Planegg, Germany), and 8.5 µL distilled deionized water. In each run, positive DNA controls that were kindly provided by Professor Dr. Roberta Iatta (University of Bari, Italy), and distilled deionized water were used as positive and negative controls. PCR amplification were run in a SimpliAmp™ thermal cycler (Thermo Fisher Scientific, Waltham, MA, USA) with conditions as described in Table 2. The PCR amplification products were documented using UV Imager (Transilluminator, Vilber Lourmat, France) after electrophoresis in a 1% agarose gel (SinaClon, Tehran, Iran) at 100 V for 60 min.
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4

Genomic DNA Extraction and 16S rRNA Sequencing

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Genomic DNA extraction was performed using FavorPrep™ Blood Genomic DNA Extraction Mini kit (FAVORGEN-Europe). The 16S rRNA gene was ampli ed using universal primers (27F 5´AGAGTTTGATCCTGGCTCAG3´and1492R:5´TACGGCTACCTTGTTACGACTT-3´) according to the methods described by Gulati et al. (2008) , and the ampli ed product was directly sequenced using the ABI PRISM BigDye Terminator v3.1 Cycle Sequencing kit on a 3730xl Genetic Analyzer (Applied BioSystems).
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5

DNA Extraction from Buffy Coat

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DNA was extracted from buffy coat using the FavorPrep™ blood genomic DNA extraction mini Kit (Favorgen) and stored at -20°C. The concentration of DNA extraction used nanodrop to check the purification of DNA with the ratio of absorbance at 260 nm and 280 nm. A ratio of ~ 1.8 is generally accepted as “pure” for DNA.
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6

Evaluating CRISPR Off-Target Effects in HEK293T Cells

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Human HEK293T cells were maintained in DMEM supplemented with 10% FBS (ATCC, CRL-11268) and 1% penicillin-streptomycin at 37°C in the presence of 5% CO2. To determine indel frequencies at candidate off-target sites, 2×105 HEK293T cells were transfected with plasmids expressing sgRNA (500 ng, pAAV-Albumin, pAAV-PCSK9, pRG2-HBB, pRG2-FANCF, or pRG2-VEGFA) and Cas9 (500 ng, pAAV-Cas9 or p3s-Cas9HC; Addgene plasmid #43945) using Lipofectamine 2000 (vendor, amount). The cells were incubated at 37°C for 3 days, after which genomic DNA was prepared using a FavorPrep Blood Genomic DNA Extraction Mini Kit (Favorgen, #FAGCK001-2). The deep sequencing data are available at the NCBI Bioproject (https://www.ncbi.nlm.nih.gov/bioproject/) under accession number PRJNA796642. We used the following criteria used by EDITAS Medicine [23 (link)] to determine whether the target was validated or false (Additional File 5: Table S4). First, the indel of the sample must be higher than 0.1% for the sample to be validated. Second, the treated/control ratio must be higher than 2.
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7

Preliminary Characterization of Bacterial Isolate RTE4

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Preliminary Characterization of RTE4 was carried out through colony morphology. Genomic DNA extraction was carried out using FavorPrepTM Blood Genomic DNA Extraction Mini kit (FAVORGEN- Europe). The 16S rRNA gene was amplified using universal primers (27F:5′-AGAGTTTGATCCTGGCTCAG-3′ and 1492R:5′TACGGCTACCTTGTTACGACTT-3 ′) according to the methods described by Gulati et al. (2008) (link), and the amplified product was directly sequenced using the ABI PRISM Big Dye Terminator v3.1 Cycle Sequencing kit on a 3730xl Genetic Analyzer (Applied BioSystems). Further, phylogenetic analysis was carried out using CLUSTAL X2 (Thompson et al., 1997 (link)). The best fit model test was carried out and phylogenetic tree was constructed using Neighbor-Joining (NJ) tree. Bootstrap analysis with 1,000 replicates was performed using MEGA7 software (Kumar et al., 2016 (link)). The culture RTE4 was deposited at National Centre for Microbial Resource (NCMR), Pune, Maharashtra, India under the general deposit with Accession no MCC 3945. The 16S rRNA gene sequence obtained was submitted to NCBI GenBank Data base with accession number-MK530435.
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8

Molecular Characterization of PMEL17 Gene

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Molecular characterisation of the PMEL17 gene was performed in three colour morphs: black and white single round (variety 1), brownish single round (variety 2) and spotted single round (variety 3) chickens. Blood samples were collected from 60 laying hens (variety 1, n=20, variety 2, n=10 and variety 3, n=30). DNA was extracted from the whole blood samples using the FavorPrep TM blood genomic DNA extraction mini kit (FAVORGEN biotech corporation, Taiwan) and stored at -20C. Exon 6 of the PMEL17 gene was then amplified using the following PCR primers (forward primer: GTGGATGTGACACAGCTGGA-3´, reverse primer: R-5´-GGAGCATCACCACCTGA-3´), with a resulting product size of 542bp. PCR products were cleaned using 2μl of ExoSAP-IT (enzyme: ExoASP-IT) per sample.
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9

Genomic DNA Extraction from Buffy Coat

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Genomic DNA was isolated from 200 μl of buffy coat using FavorPrepTM Blood Genomic DNA Extraction Mini Kit (Favorgen, Taiwan) by following instruction manual. Concentration and purity of DNA was determined using Nanodrop spectrophotometer (NanoDrop 2000c, Thermo scientific, USA) and kept at -20°C until analyzed.
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10

HCMV DNA Extraction and Detection

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DNA was extracted from saliva, buffy coat, or urine using FavorPrep blood genomic DNA extraction mini kits (Favorgen, Ping-Tung, Taiwan) and stored at −80°C. HCMV was detected using an in-house qPCR assay with primers targeting the UL54 gene (HCMV DNA polymerase) (36 (link)).
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