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20 protocols using ab8189

1

Histological Analysis of Tooth Specimens

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The teeth specimens were fixed in 4% paraformaldehyde for 24 h and then decalcified with decalcifiers (Rio Gold) for ∼1 month, washed with distilled water, dehydrated and embedded in paraffin. Sections were coronally cut longitudinally and stained with hematoxylin and eosin, Masson's Trichrome and Immunofluorescence. For Immunofluorescence, randomly selected sections were blocked in 5% goat serum. Primary antibody including DSPP (sc-73632, 1:100, Santa Cruz Biotechnology), von Willebrand Factor antibody (vWF, ab6994, 1:100, Abcam), S100 (ab868, 1:100, Abcam) and PGP9.5 (ab8189, 1:50, Abcam) were incubated overnight at 4 °C. Following PBS washing, sections were incubated with secondary antibodies for 2 h at room temperature, washed and counterstained with DAPI (Sigma-Aldrich, St. Louis, MO). The same procedures were performed for negative controls but without primary antibodies.
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2

Immunohistochemical Analysis of TRPA1 and TRPV1

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DSM samples were fixed in 4% formaldehyde and cryoprotected in 30% sucrose. The bladders were frozen in OCT compound and then cut into 5 μm transversal sections. The specimens were blocked in PB containing 5% bovine serum albumin, 10% normal goat serum, and 0.3% Triton X-100 for 2 h at room temperature. Next, the sections were allowed to incubate with the primary antibodies rabbit anti-TRPA1 (ab58844, 1 : 100, Abcam, Cambridge, UK) [18 (link)] or rabbit anti-TRPV1 (ab31895, 1 : 200, Abcam, Cambridge, UK) [19 (link)] and mouse anti-PGP 9.5 (ab8189, 1 : 100, Abcam, Cambridge, UK) for 48 h. After washing, the sections were incubated with secondary antibodies Alexa Fluor 488 goat anti-mouse (A-11029, 1 : 200, Invitrogen, Madrid, Spain) and Alexa Fluor 594 goat anti-rabbit (A-11037, 1 : 200, Invitrogen, Madrid, Spain). The cell nuclei were stained using DAPI (P36935, Molecular Probes, Eugene, USA). The intensity of fluorescence was evaluated using free software, ImageJ (USA).
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3

Quantifying FGF2 Biomarker Expression

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IHC staining was performed as previously described (16 (link)). Biomarker expression levels were detected using a commercially available rabbit polyclonal antibody against FGF2 (1:200; cat no. ab126861; Abcam). FGF2 expression levels were scored according to staining intensity and proportion. The intensity score was classified as 0 (no staining), 1 (weak staining), 2 (moderate staining) or 3 (strong staining). The proportion score, based on the percentage of tumor cells, was classified as 0 (<5%), 1 (6–35%), 2 (36–70%) or 3 (>70%). The final score was calculated using the proportion and the staining intensity scores and classified as follows: -, 0–1; +, 2–3; ++, 4–6 and +++, >6. Low expression levels were defined as a total score <4; high expression levels were defined as a total score ≥4. The low expression group included ‘-’ and ‘+’, while the high expression group included ‘++’ and ‘+++’.’ The mouse monoclonal antibody against PGP9.5 (1:500; cat. no. ab8189; Abcam) was used as a pan-neuronal marker.
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4

Immunohistochemistry for PGP9.5 in Tissue Sections

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The paraffin embedded slides were dewaxed in xylene and cleared in ethanol, then hydrated in PBS. Dako Antigen Retrieval was performed in a water bath at approximately 80°C. The slides were then incubated in a humidification chamber with 10% triton in 1% H2O2 at room temperature for 20 min. They were blocked in 10% donkey serum for 1 hour and then incubated with mouse anti PGP9.5 primary antibody (ab8189, abcam) overnight at 4°C. The next day the slides were incubated with donkey anti-mouse secondary antibody (Alexa Fluor 594, A21203, Life Technologies, ThermoFisher Scientific) for 1 hour at a 1:400 dilution. They were rinsed and then stained with DAPI for 10 min and then mounted and cover slipped.
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5

Immunohistochemical Analysis of Endometriosis Lesions

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Human endometriosis lesion tissue samples were obtained from provitro GmbH (Berlin, Germany). Patients provided informed consent for the provision of all tissue samples. Tissue samples were paraffin embedded, sectioned, and mounted on Superfrost slides. Prior to staining, mounted tissue sections were deparaffinized and rehydrated. Sections were then permeabilized in 0.3% Triton X-100/phosphate buffered saline (PBS) and blocked in 10% normal goat serum/PBS. Sections were then co-stained by incubating with the primary antibodies, α-P2X3 rabbit polyclonal (Abcam, ab10269; 1:1000) and α-PGP9.5 mouse monoclonal (Abcam, ab8189; 1:1000) diluted in 1% normal goat serum and 0.1% Triton X-100 in PBS at 4 °C overnight. Sections were washed three times in PBS for 15 min and incubated with appropriate Alexa Fluor secondary antibodies diluted in 3% normal goat serum for 2 h at room temperature. Sections were washed in PBS as described above and counterstained using DAPI to visualize nuclei. Mounted sections were dried overnight and coverslipped using Flouromount-G. Images were acquired with an Olympus IX81 microscope (10× objective, NA: 0.30, resolution: 0.92 μm, Olympus).
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6

Immunofluorescence Analysis of Newborn Piglet Pancreas

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Pancreatic tissues were excised from newborn piglets and immediately frozen in OCT with liquid N2. Tissue segments were kept at −80 °C. Tissues were cut into 8 µm sections, fixed in 10% cold Z-fix for 5 min, permeabilized in 0.2% Triton X-100 for 10 min and blocked in 10% goat serum for 30 min at room temperature. Tissue sections were incubated for 1 hour at 37°C with anti-beta-III tubulin (1:250 dilution, Millipore MAB1637, Temecula, CA), anti-chromogranin A (1:400 dilution, Abcam ab43861, Cambridge, MA), anti-von Willebrand (1:1000 dilution, Abcam ab68545, Cambridge, MA), protein gene product 9.5 (1:100 dilution, Abcam ab8189, Cambridge, MA) followed by secondary antibody (Alexa-flour 488 and Alexa-flour 568 (1:500 dilution, Life Technologies, Grand Island, NY) for 30 min at room temperature. Sections were mounted with Vectashield containing DAPI (Vector Labs, Burlingame, CA) to visualize nuclei. Images were acquired using identical parameters on a Zeiss 710 confocal microscope.
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7

Investigating Peripheral Nerve Changes

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To examine the effect of CEC‐sEVs and oxaliplatin on DRG neurons and IENF, immunofluorescent staining was performed on DRG (8 μm thick) and footpad tissue (20 μm thick) sections, respectively, according to our published protocols (Zhang et al., 1999, 2010, 2013, 2014). The following antibodies were employed: polyclonal anti NF200 (N4142, MilliporeSigma), CGRP (ab43873, abcam) and monoclonal anti‐PGP9.5 (ab8189, Abcam). Immunoreactive cells and nerve fibres were imaged using laser scanning confocal microscopy (LSCM) and were quantified according to our published protocols (Buller et al., 2010; Wang et al., 2014).
To identify the morphometric changes within sciatic nerves, toluidine blue staining was performed on semi‐thin transverse sections (2 μm thick) of sciatic nerve and imaged using a 100x oil immersion lens (Olympus). Myelin sheath thickness, myelinated fibre and axon diameter were measured using the MCID system, as described in our published protocols (Zhang et al., 1999, 2010, 2013, 2014). The myelin sheath and axons in ultra‐structural level were also analyzed by means of TEM.
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8

Primary Murine Enteric Neuronal Cell Culture

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Small intestines were aseptically removed from l-day-old BALB/c mice. The intestines were incubated in collagenase XI (750 µg/ml) and dispaseI (250 µg/ml) at 37°C for 30 min. Then the tissues were purified through an osmotic gradient with 2% sorbitol. The cell pellet was cultured in DMEM supplemented with 10% FBS, insulin (0.25 U/ml), EGF (20 ng/ml) and 1% penicillin (100 U/ml) /streptomycin (100 mg/ml) at 37°C in 5% CO2 and 95% atmosphere. The purification of primary cultured enteric neuronal and glial cells was confirmed by immunofluorescence using mouse monoclonal to PGP9.5 (ab8189; Abcam) and rabbit polyclonal to GFAP (ab7260; Abcam). The primary cultured enteric neuronal and glial cells on culture day 7 were used. The primary cultured enteric neuronal and glial cells were incubated with LPS (50 ng/ml) for 24 h. Cell viability was evaluated with the Cell Counting Kit-8 (CCK-8). The release of lactate dehydrogenase (LDH) was detected using the assay kit (Nanjing Jiancheng Bioengineering Institute, China).
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9

Triton X-100 Antigen Retrieval and Immunostaining

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Light antigen retrieval was performed in 0.1 M of PB with pH 7.3, 0.2% of hydrogen peroxide, and 0.05% of Triton X-100 for 25 min at room temperature (RT). Sections were then washed twice in PBS and incubated in a blocking solution of tris-buffered saline (TBS) with 0.05% of Tween 20, 2% of bovine serum albumin (BSA), and 2% of normal donkey serum (NDS) for 1 h before applying primary antibodies overnight at 4°C. The following primary antibodies (diluted in the blocking solution) were used: Rabbit anti-SCN9A-ATTO Fluor-663 antibody (1:100, ASC-008-FR, Alomone Labs, Jerusalem, Israel), Mouse anti-PGP9.5 antibody (1:200, ab8189, Abcam, Cambridge, United Kingdom), and rabbit anti-PGP9.5 (1:500, ab108986, Abcam). For the detection of the primary antibody, secondary antibody raised in donkey and conjugated with Alexa-647 fluorophore was used (1:500, Molecular Probes, Fisher Scientific, Illkirch, France) for 1 h at RT. DAPI staining (1:2000, Molecular Probes, Thermofisher, Illkirch, France) was performed at the same time as in the secondary antibody. Sections were then washed twice with PBS then placed on superfrost glass slides. One drop of Immu-Mount (Fisher Scientific, Illkirch, France) was added over the tissue sections and a coverglass was placed over the slide.
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10

Histological Analysis of Mechanoreceptors

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Immediately after harvesting the specimens were fixed in 4% buffered formalin solution and embedded in paraffin. The number of sections to be made in each plane of the specimens was based on the size of the mechanoreceptors: Since a single receptor can extend over some 7 μm cuts, the distance between the cut planes was set to 70 μm. This procedure allows the number of receptors counted more than once to be kept very low [12 (link)]. One plane therefore consists of 10 sections; a total of 6 planes (A–F) were cut per sample as shown in Fig. 1.

Sketch of the sectional planes A–F of one specimen. One plane equals 70 μm

In each of the planes, the first specimen was stained with HE, the second one with polyclonal antibody against S100 (abcam, ab15520), the third one with polyclonal antibody against p75 (sigmaaldrich, N3908) and the fourth one with monoclonal antibody against PGP9.5 (abcam, ab8189). These three antibodies are widely used in immunohistochemical analysis of neuronal structures and have proven to be the most reliant method in the detection of mechanoreceptors [11 (link), 13 (link)–15 ].
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