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Lipopolysaccharides lps from escherichia coli o55 b5

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Lipopolysaccharides (LPS) from Escherichia coli O55:B5 is a chemical compound obtained from the cell wall of the Escherichia coli bacterium. It is a key component of the outer membrane of Gram-negative bacteria and plays a role in their structural and functional integrity.

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12 protocols using lipopolysaccharides lps from escherichia coli o55 b5

1

Synthetic Peptide PBD-2 Antimicrobial Assay

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The mature peptide of PBD-2 was synthesized by Neweast Biosciences (# 60001, Neweast Biosciences, Wuhan, China) in which the amino acid sequence is DHYICAKKGGTCNFSPCPLFNRIEGTCYSGKAKCCIR. The mouse macrophage cell line RAW 264.7 was obtained from the American Type Culture Collection (ATCC® TIB-71™, Manassas, VA, USA), and the cells were cultured in RPMI-1640 (# SH30809.01, Hyclone®, Logan, UT, USA) containing 10% heat-inactivated FBS (# 10099-141C, Gibco®, Grand Island, NY, USA) and 1% penicillin/streptomycin (# SV30010, Hyclone®, Logan, UT, USA) at 37°C with 5% CO2. The Salmonella Typhimurium 14028 strain used in this study was obtained from the American Type Culture Collection (ATCC® 14028™, Manassas, VA, USA), and the bacterial cells were cultured on tryptic soy agar (TSA, # 236950, BD® Difco™, Sparks, MD, USA) or in tryptic soy broth (TSB, # 211825, BD® Difco™, Sparks, MD, USA) at 37°C. Lipopolysaccharides (LPS) from Escherichia coli O55:B5 were purchased from Sigma (# L2880, Sigma-Aldrich®, MO, USA).
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2

Investigating Inflammatory Pathways in LPS-Induced Response

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Lipopolysaccharides (LPS) from Escherichia coli O55:B5 (Sigma USA) were used. IFN-τ (rOvIFN-τ, Lot: IFNT-29O, Creative Bioarry USA). Primary antibodies against AKT, PI3K and PTEN were obtained from Cell Signaling Technology (Bio-Techne Corporation Brands, USA). Cytokine (IL-1β, IL-6 and TNF-α) ELISA kits were obtained from Bioscience (Newark, DE, USA).
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3

Plasmid Extraction and Restriction Mapping

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The TIANprep plasmid extraction kit was obtained from Taingen biotech, Beijing, China. The restriction enzymes KpnI, XbaI, and SacI were purchased from TaKaRa Biotechnology (Dalian, China). Protein marker (Thermo Fisher Scientific, United States), Zeocin (Invitrogen, Carlsbad, CA, United States). P. pastoris (strain X-33), E. coli (strain DH5α), expression vectors pPICZαA and lipopolysaccharides (LPS) from Escherichia coli O55: B5 were obtained from (Sigma, Aldrich, United States) and have been routinely used in our lab.
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4

Synthesis and Characterization of Vasoinhibin Peptides

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Six linear oligopeptides (>95% pure) acetylated and amidated at the N- and C-termini, respectively (Table 1), the linear (Vi45-51), and the cyclic-retro-inverse-vasoinhibin-(45-51)-peptide (CRIVi45–51) were synthesized by GenScript (Piscataway, NJ). Recombinant vasoinhibin isoforms of 123 (Vi1-123) (16 (link)) or 48 residues (Vi1-48) (15 (link)) were produced as reported. Recombinant human prolactin (PRL) was provided by Michael E. Hodsdon (17 (link)) (Yale University, New Haven, CT). Human recombinant plasminogen activator inhibitor 1 (PAI-1) was from Thermo Fisher Scientific (Waltham, MA), and human tissue plasminogen activator (tPA) from Sigma Aldrich (St. Louis, MO). Rabbit monoclonal anti-PAI-1 [EPR17796] (ab187263, RRID:AB_2943367) and rabbit polyclonal anti-β-tubulin antibodies (Cat# ab6046, RRID:AB_2210370) were purchased from Abcam (Cambridge, UK), and mouse monoclonal anti-uPA receptor (anti-uPAR) from R&D systems (Minneapolis, MN, Cat# MAB807, RRID:AB_2165463). The NF-κB activation inhibitor BAY 11-7085 and lipopolysaccharides (LPS) from Escherichia coli O55:B5 were from Sigma Aldrich. Recombinant human vascular endothelial growth factor-165 (VEGF) was from GenScript, and basic fibroblast growth factor (bFGF) was donated by Scios, Inc. (Mountain View, CA).
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5

Mitochondrial Respiration Assay in Cells

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Oxygen consumption rate (OCR) was assessed in the extracellular analyzer XFp (Seahorse Agilent Technologies). Mitochondrial respiration assays were performed following the described protocol [14 (link)] with minor modifications in reagents concentrations: 2.6 μM oligomycin (#75351, Sigma-Aldrich), 1.0 μM carbonyl cyanide 4-(trifluoromethoxy)-phenyl-hydrazone (FCCP) (C2920, Sigma-Aldrich) and 1.0 μM rotenone/antimycin A (R8875 and A8674, respectively, both from Sigma-Aldrich). 40.000 cells/well were seeded for approximately 24 hours on XFp plates prior to performing the test. Data was obtained using Agilent Seahorse Wave 2.6.3.5 software (Seahorse Agilent Technologies). When indicated, cells were preincubated during 4 hours with 200 ng/mL Lipopolysaccharides (LPS) from Escherichia coli O55:B5 (L6529, Sigma-Aldrich) before testing.
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6

Anti-CALR Antibody and LPS-Induced Lung Injury

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Nine to twelve weeks old C57BL/6 male mice were given intraperitoneal (i.p.) injection with 14 μg/kg mouse anti-CALR antibody (aCALR) (Abcam, Cambridge, MA, catalog number: ab223614) and intratracheal (i.t.) injection with 5 mg/kg Lipopolysaccharides (LPS) from Escherichia coli O55:B5 (Sigma, St. Louis, Missouri, USA). The mice were injected with the same doses of goat IgG isotype and LPS were used as untreated control group. The mice were treated with PBS as naïve controls. Two days after treatment, bronchoalveolar lavage (BAL) and lung tissues were collected for analysis. All animals were housed and treated according to the guidelines of the Institutional Animal Care and Use Committee of the Fudan University, Zhongshan Hospital in China. All experiments were approved by the committee.
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7

Quantitative Analysis of Immunomodulatory Compounds

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SPE Bond Elut Plexa was from Agilent (Santa Clara, CA, USA). Fetal bovine serum (FBS) was purchased from Gibco Ltd. (Grand Island, NY, USA). Dulbecco's modified Eagle's medium (DMEM) was from Hyclone (Logan, UT, USA). Lipopolysaccharides (LPS) from Escherichia coli O55:B5 was from Sigma-Aldrich Co. (St. Louis, MO, USA). Recombinant Mouse IL-4 was from R & D system (Minneapolis, MN, USA). CCK-8 was from meilunebio (Dalian, Liaoning, China). RNAprep pure Cell/Bacteria Kit, FastKing gDNA Dispelling RT SuperMix, and SuperReal PreMix Plus (SYBR Green) were purchased from TIANGEN (Beijing, China). SFI was provided by Livzon Pharmaceutical Group Inc. (Zhuhai, Guangdong, China). Compounds 1-15 (purities ≥ 98%) were purchased from Nautre-Standard (Shanghai, China). 800TS Microplate Reader was from Bio-Tek (Winooski, VT, USA); Q5000 UV-Vis Spectrophotometer was from Quawell Technology, Inc. (San Jose, CA, USA); S1000 Thermocycler was from Bio-Rad (Hercules, CA, USA); Quantstudio 6 Flex Real-Time PCR System was from ThermoFischer Scientific (Waltham, MA, USA).
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8

Rosemary, Ashwagandha, and Luteolin Extract Preparation

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Plant extracts: rosemary extract from Rosmarinus officinalis (standardized to 6% carnosol; 15% carnosic acid) was obtained from Flavex (Rehlingen, Germany), ashwagandha extract from Withania somnifera (standardized to 2% withaferin A) was obtained from Verdure Sciences (Noblesville, IN, USA), and luteolin (standardized to 98% luteolin, from Sophora japonica) was obtained from Jiaherb (Pine Brook, NJ, USA). For making PB125 solutions, the rosemary, ashwagandha, and luteolin powders were mixed at a 15:5:2 ratio by mass, then extracted at 50 mg of mixed powder per mL in ethanol overnight and the supernatant isolated [24 (link)]. Cell culture: media and antibiotics were purchased from Thermo Fisher Scientific (Waltham, MA, USA). LPS (lipopolysaccharides from Escherichia coli O55:B5) was from Sigma-Aldrich (St. Louis, MO, USA).
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9

Extraction and Standardization of Plant Bioactives

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Plant extracts: rosemary extract from Rosmarinus officinalis (standardized to 6% carnosol; 15% carnosic acid) was obtained from Flavex (Rehlingen, Germany), ashwagandha extract from Withania somnifera (standardized to 2% withaferin A) was obtained from Verdure Sciences (Noblesville, IN, USA), and luteolin (standardized to 98% luteolin, from Sophora japonica) was obtained from Jiaherb (Pine Brook, NJ, USA). For making PB125 solutions, the rosemary, ashwagandha, and luteolin powders were mixed at a 15:5:2 ratio by mass, and then extracted at 50 mg of mixed powder per mL in ethanol overnight and the supernatant was isolated [24 (link)]. Cell culture: media and antibiotics were purchased from Thermo Fisher Scientific (Waltham, MA, USA). LPS (lipopolysaccharides from Escherichia coli O55:B5) was from Sigma-Aldrich (St. Louis, MO, USA).
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10

Murine Macrophage Activation Analysis

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Murine macrophage-like cell line RAW 264.7 cells (RRID: CVCL_0493) were grown in DMEM
medium supplemented with 10% fetal bovine serum (FBS) and 100 µg/mL of
penicillin/streptomycin by incubation in a humidified 5% CO2 atmosphere at
37°C. After the medium was exchanged with fresh DMEM containing 0.5% FBS, 1 µg/mL LPS
(Lipopolysaccharides from Escherichia coli O55:B5, Sigma-Aldrich, St.
Louis, MO, USA) was added to stimulate the cells in the presence or absence of the
extracts at a 1% (v/v) final concentration, and the cells were then
incubated for 5 hr for quantitative real-time reverse-transcription polymerase chain
reaction (qRT-PCR) experiments or 24 hr to determine the concentrations of nitric oxide
(NO), reactive oxygen species (ROS), and the cytokines interleukin 6 (IL-6) and tumor
necrosis factor alpha (TNF-α).
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