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11 protocols using picolinic acid

1

Tryptophan Metabolism Metabolite Analysis

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Methanol (CH3OH), ammonium acetate (CH3COONH4), acetonitrile (CH3CN), picolinic acid, 3-hydroxykynurenine, quinolinic acid, serotonin, 5-hydroxytryptophan, kynurenine, 3-hydroxyanthranilic acid, tryptamine, L-tryptophan, 5-hydroxyindole, acetic acid, indoxyl sulfate, N-Acetylserotonin, xanthurenic acid, indole-3-acetamide, kynurenic acid, DL-indole-3-lactic acid, indole-3-carboxaldehyde, indole-3-acetic acid, tryptophol, melatonin, 5-hydroxyindole acetic acid-D5, serotonin-D4, indole-3-lactic acid-D4, kynurenic acid-D5, melatonin-D4, picolinic acid-D3, tryptamine-D4, xanthurenic acid-D4, 3-hydroxyanthranilic acid-D3, 3-hydroxykynurenine-13C2-15N, 5-hydroxytryptophan-D4, indole-3-acetamide-D5, kynurenine-D4, L-tryptophan-13C11,15N, and tryptophan-D5 were purchased from Sigma Aldrich, Merck KGaA (Darmstadt, Germany) and other reagents and chemicals used in the study were purchased from local suppliers. The reagents and chemicals were of analytical grade or higher purity. Additionally, the yeast strain S. cerevisiae STG S101 was purchased from Fermentis (Marcq-En-Baroeul, France).
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2

Quantification of Oxysterols by LC-MS/MS

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24S-Hydroxycholesterol [cholest-5-ene-3-beta,24S-diol], 25-hydroxycholesterol [cholest-5-ene-3-beta,25-diol], 27-hydroxycholesterol [cholest-5-ene-3beta,27-diol], 24(R/S)-hydroxycholesterol-d6 [26, 26, 26, 27, 27, 27-hexadeuterocholest-5-ene-3 beta,24-diol], 25-hydroxycholesterol-d6 [26, 26, 26, 27, 27, 27-hexadeuterocholest-5-ene-3 beta,25-diol] and 27-hydroxycholesterol-d6 [25, 26, 26, 26, 27, 27-hexadeuterocholest-5-ene-3 beta,27-diol] were obtained from Avanti Polar Lipids (Alabama, USA). 2-methyl-6-nitrobenzoic anhydride, 4-dimethylaminopyridine, picolinic acid, pyridine and trimethylamine were purchased from Sigma Aldrich Co. (St. Louis, USA). Phosphoric acid and potassium hydroxide were provided by Junsei (Tokyo, Japan). Distilled water was purified using a Milli-Q purification system (Millipore, Massachusetts, USA). High performance liquid chromatography (HPLC)-grade methanol, ethanol, hexane and 2-propanol were purchased from Burdick & Jackson (Ulsan, Korea).
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3

Modulation of PDAC Cell Cytotoxicity

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In total, 5000 to 7500 PDAC cells in 50 µL complete medium in 96-well plates (Nunc) were cultured either with 50 µL of 1 mM NaOH solvent control, 1 mM 1-methyl-levo-trypthophan (1-l-MT, Sigma Aldrich) or 1 mM 1-methyl-dextro-tryptophan (1-d-MT, Sigma Aldrich), as shown in Figure 3, or with medium, as shown in Figure 5, overnight. After 24 h, short-term activated Vγ9Vδ2 γδ T cells with 12.5 IU/mL rIL-2 and 300 nM BrHPP were added at an E/T ratio of 25:1 to the indicated PDAC cells or cultured alone. In Figure 5, short-term activated Vγ9Vδ2 γδ T cells were cultured in medium, with 1 mM of previously titrated l-kynurenine (200 to 1000 µM, R&D System) or with 1 mM of previously titrated picolinic acid (Sigma Aldrich) for 24 h before coculturing these cells with different PDAC cells. For CD107a-assay, 10 µL FITC-labeled anti-human CD107a mAb clone H4A3 (50 µg/mL, BioLegend) was added directly, whereas 3 µM monensin (Merck) was added 1 h after coculturing the cells. After an additional 3 h, Vγ9Vδ2 γδ T cells were stained with PE-labeled anti-TCRγδ mAb (clone 11F2, BD Biosciences), and analyzed by flow cytometry.
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4

Tryptophan Metabolites Modulate T Cell Activation

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Trp and Trp metabolites Kyn, 3-hydroxykynurnine (HK), 3-hydroxyanthranilic acid (HAA), QA, kynurenic acid (KA), picolinic acid (PA), anthranilic acid (AA), serotonin (SRN), Nicotinamide adenine dinucleotide (NAD+) and NAD+ precursors NAM, NR, NMN, and nicotinic acid (NA) were purchased from Sigma. Healthy donor peripheral blood mononuclear cells (PBMC) (1×106) were stimulated with anti-CD3/CD28 Dynabeads (Gibco) in the presence of various amounts of the different metabolites in complete medium (RPMI-1640 with 10% FBS and 10U IL2) for 3-6d. Normal donor CD8+ T cells were also cultured with NAD+ in the presence of different antagonists against purinergic receptors.
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5

Kinetic Analysis of Mushroom Tyrosinase

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MT (mushroom tyrosinase: EC 1.14.18.1) were prepared as previously described (18 ). P-hydroxycinnamic (p-coumaric acid λ max = 288 nm, ε= 19400 M-1. cm-1), 3,4-dihydroxycinnamic acid (caffeic acid, λ max = 311 nm, ε =12000 M-1. cm-1), 4-amino benzoic acid, 2-amino benzoic acid, nicotinic acid, and picolinic acid were purchased from Sigma. All other reagents were homemade analytical grade. The water used was re-distilled and ion-free; spectrophotometric measurements were carried out using a Rayleigh model 2100 spectrophotometer. The chemical formulas of all compounds (substrates and inhibitors) used in this research are given in (Figure 1). The buffer used throughout this research was 15 mM phosphate buffer solution (PBS), pH=6.8, and the corresponding salts were obtained from Merck. All experiments were carried out at 293 K and all solutions prepared in doubly distilled water. Freshly prepared enzyme and substrate solutions were used in this work.
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6

Lipid Extraction and Analysis Protocol

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HPLC grade water and acetonitrile (ACN) were purchased from (VWR International-UK). Acetone was purchased from (Fisher Scientific, Loughborough, UK). HPLC grade methanol (MeOH, ≥99.9%), HPLC grade chloroform (CHCl3, ≥99.9%), 5-chloro-2-mercaptobenzothiazole (5C2M), 2-mercaptobenzothiazole, 6-aza-2-thiothymine, 2-(4-hydroxyphenylazo) benzoic acid, 2,5-dihydroxy benzoic acid (DHB), super-DHB, sinapic acid, 2,4,6-trihydroxy acetophenone monohydrate, 2,5-dihydroxy acetophenone, α-cyano-4-hydroxycinnamic acid, picolinic acid, and 9-aminoacridine hemihydrate were purchased from (Sigma Aldrich, Gillingham, UK). Porcine Gb3 standard and N-heptadecanoyl ceramide trihexoside (C17:0) internal standard were purchased from Matreya (Pleasant Gap, PA, USA).
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7

Pterostilbene-Picolinic Acid Cocrystal Polymorphs

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Picolinic acid was purchased
from Sigma-Aldrich and used without further purification. Pterostilbene
was purchased from Dynveo and purified following the procedure described
in ref (11 (link)). Single
crystals suitable for an SXCRD analysis were obtained as follows.
Polymorph A: a pterostilbene/Picolinic acid cocrystal (polymorph A)
(20 mg, 0.053 mmol) was dissolved in toluene (0.3 mL) at 65 °C.
Then, the solution was cooled to 25 °C and stored sealed. Single
crystals were observed after 145 days. Polymorph B: pterostilbene
(50 mg, 0.195 mmol) and Picolinic acid (24 mg, 0.195 mmol) were dissolved
together in methyl ethyl acetone (0.4 mL) at 25 °C and stored
sealed. Single crystals were observed after 289 days.
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8

Quantification of Tryptophan Metabolites

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Normal standards—tryptophan, l-kynurenine, pyridine-2,3-dicarboxylic acid (QUIN), KYNA, picolinic acid, 3-HK—were purchased from Sigma-Aldrich (MO, USA). The Internal standards (IS)—tryptophan-d3, l-kynurenine-d4, QUIN-d3 [13C6], 3-HK-d3—were purchased from Toronto Research Chemicals Canada (Toronto Canada). KYNA-d5 and picolinic acid-d4 were obtained from C/D/N Isotopes Inc. (Quebec, Canada). Solutions for the mobile phases—water, methanol and formic acid 99%—were all LC-MS grade from Chromasolve, Honeywell, VWR International AB, Stockholm (Sweden). Solutions for plasma preparations: ammonia (32%) was purchased from VWR and ZnSO4 was purchased from Sigma-Aldrich (MO, USA). Stock solutions of all unlabeled standards (tryptophan, kynurenine, QUIN, KYNA, picolinic acid, and 3-HK) were prepared in water for HPLC, LCMS grade, and stored at – 20 °C. Calibrators were generated mixing all compounds in a final solution of 8.3 μM and 10 times higher for tryptophan, 83 μM.
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9

Synthesis and Characterization of Biaryl Compounds

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Picolinic acid, quinolinic acid, acetonitrile and trifluoroacetic acid were purchased from Sigma-Aldrich. The selected FDA-approved drugs were purchased from commercial sources (See SI for specific sources and purity data). PdCl2(NH2CH2COOH)2 was prepared according to the literature.29 (link) 2’,4’-difluoro-4-hydroxy-[1,1’-biphenyl]-3-carboxylic acid (diflunisal, 1), 2’,4’-difluoro-[1,1’-biphenyl]-3-carboxylic acid (2), 2’,4’-difluoro-[1,1’-biphenyl]-4-ol (3) were acquired from commercial sources and used without further purification. Their identity was confirmed using 1H NMR. Unless otherwise noted, reagents were purchased from various commercial sources and used as received. All tested compounds, whether synthesized or purchased, were >95% pure as deemed by UPLC analysis. H2O, used for synthetic reactions, was distilled under an atmosphere of N2 prior to use.
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10

Quantitative Analysis of Kynurenine Pathway Metabolites

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Tryptophan, kynurenine, kynurenic acid, anthranilic acid, 3-hydroxykynurenine, 3-hydroxyanthranilic acid, xanthurenic acid, picolinic acid, and quinolinic acid were obtained from Sigma Aldrich (Poole, United Kingdom). The stable isotope–labeled internal standards were 2H5-Tryptophan (QMx Laboratories, Thaxted, United Kingdom), 2H6-kynurenine sulfate and 2H5-kynurenic acid (CK isotopes, Ibstock, United Kingdom), and 2H3-picolinic acid and 13C3,15N-quinolinic acid (LGC standards, Teddington, United Kingdom). Acetonitrile and methanol were obtained from Rathburn Chemicals (Walkerburn, United Kingdom) and Fisher Scientific UK (Loughborough, United Kingdom), respectively.
Standards of each analyte were used to automatically tune in multiple reaction monitoring (MRM) mode. Transition optimizations were performed manually. xanthurenic acid was significantly more sensitive in negative ion mode, but, with the chromatographic conditions used, there was massive matrix ion suppression. Consequently, xanthurenic acid was measured in positive ion mode.
Because analyte retention times on Chirobiotic-T columns tend to be matrix dependent, there is a critical requirement for the appropriate stable isotope internal standards. Consequently, when stable isotopes were unavailable, 2 separate transitions, when possible, were used to calculate and then confirm the result.
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