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3 protocols using vp k451

1

Immunohistochemical Analysis of Tumor Hypoxia

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Tumors were fixed in 4% paraformaldehyde, embedded in paraffin, and cut into 5-µm sections. Immunostaining for KIT (Cell Signaling Technology #3074; 1:200), Ki67 (Vector Laboratories #VP-K451; 1:1000), and CD31 (Abcam #ab28364; 1:50) was performed as before (29 (link)). Intratumoral hypoxia was detected by i.p. injection of pimonidazole (60 mg/kg, Hypoxyprobe-1) 1h prior to sacrifice of KitV558del/+ mice. Pimonidazole was detected with a Discovery XT processor (Ventana Medical Systems) using deparaffinized tissue sections after antigen retrieval with CC1 buffer (Ventana) and blocking for 30 minutes with Background Buster solution (Innovex). Anti-pimonidazole mouse monoclonal antibody (Hypoxyprobe Inc.) was applied at 0.12 µg/ml and sections were incubated for 5h, followed by 1h incubation with biotinylated horse anti-mouse IgG (Vector Labs, cat# MKB-22258) at 1:200 dilution, then Streptavidin-HRP D (part of DABMap kit, Ventana), and followed by incubation with Tyramide Alexa Fluor 488 (Invitrogen, cat# T20922). Slides were counterstained and analyzed on an Axio2 Imaging wide-field microscope (Zeiss).
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2

Immunostaining of DNA Repair Factors

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This procedure was performed as described previously (19 (link)). Where indicated, immunostaining was preceded with in situ cell fractionation to reveal insoluble proteins (24 (link)). Fluorescent signals were imaged with a Zeiss CLSM710 using a 63× oil (NA = 1.4) objective. Repair foci were quantified using an automated routine in ImageJ (http://rsbweb.nih.gov/ij/) or by visual scoring. Antibodies used for immunostaining were: 53BP1 (Abcam, ab36823, 5 μg/ml), BRCA1 (Calbiochem, MS110, 0.3 μg/ml), cyclin B1 (Cell Signaling Technology, clone D5C10, 1:200), FLAG (Sigma, M2, 2 μg/ml), γH2AX (Milipore, JBW301, 3.3 μg/ml), Histone H4 acetylated (Milipore, 06–598, 5 μg/ml), Histone H4K20me (Abcam, ab9051, 5 μg/ml), Ki67 (Vector Laboratories, VP-K451, 1:1000), lamin B (Abcam, Ab16048, 2 μg/ml), NuMA (B1C11, 1:2), NuMA full-length (Abcam, ab36999, 1:100), NuMA proximal coiled-coil (Bethyl Laboratories, A301–510A, 4 μg/ml), NuMA distal C-terminal domain (Abcam, clone EP3976, 1:250), RAD51 (Abcam, ab63801, 1:1000), SNF2h (Abcam, ab3749, 15 μg/ml or clone 3.25(2), 4 μg/ml) and WSTF (Abcam, clone EP1704Y, 1:100). Note that for immunostaining with RAD51 antibodies, a permeabilization step with 0.5% triton X100 was performed after fixation with paraformaldehyde.
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3

In vivo Evaluation of GBM Tumor Differentiation and Malignancy

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To determine the differentiation and malignancy of GBM tumor in vivo, 0.3 × 106 human GBM 276 BTICs were stereotactically injected into the right striatum (AP=−0.8 mm, H=3.0 mm) of immunosuppressed nude mice. Thirty days post injection, 0.5 × 106 GFP/luciferase-hAMSCs or PBS were stereotactically injected into the brain (AP=−0.8 mm, H=1.5 mm) of the same side. After 3 weeks, the mice were perfused. The perfused mice brain sections were immunostained for stemness marker Nestin (Millipore, MAB5326), astrocytic marker GFAP (DAKO Z0334, Glostrup, Denmark), neural marker Tuj1 (Covance, Princeton, NJ, USA; PRB-435p), proliferation marker Ki-67 (Leica VP-K451), necrosis marker TNF-α (Abcam, ab6671), and pro-angiogenic marker VEGF (Abcam ab46154). GBM cells were identified from the background of mouse brain cells by staining for human nuclei (red) and DAPI (blue). Although injected GFP/luciferase-hAMSCs did express GFP, the green signal from GFP fluorescence was significantly weaker than the green signal of immunostaining for Nestin, GFAP, and Tuj1, and therefore did not interfere with the identification of these green fluorescence-marked proteins. Quantification of cells was performed.
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